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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0680400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0407) R2 : 0.0015
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.071 (0.0858) R2dN8 : 0.00194 R2N8 : 0.0015
σ : 0.767
deviance : 270.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.82 0.743 3.05 0.136 0.101 0.261 0.587 1.02 0.0267 10.5 25 30 -- --
256.42 0.746 3.02 0.451 0.0376 0.326 0.488 -- 0.16 8.35 24.3 73 -- --
256.08 0.745 3.04 0.188 0.0942 0.257 -- 0.819 0.0358 11 24.9 29 -- --
256.64 0.746 3.01 0.478 0.0847 0.382 -- -- 0.164 10 24.27 99 -- --
256.52 0.746 3.05 0.219 -- 0.257 -- 0.776 0.0388 -- 24.81 43 -- --
263.83 0.761 3.05 0.37 0.152 -- 0.721 -- -0.0297 5.7 -- -- -- --
265.06 0.762 3.05 0.374 0.158 -- -- -- -0.033 5.02 -- -- -- --
256.91 0.747 3.01 0.491 -- 0.358 -- -- 0.16 -- 24.3 100 -- --
262.84 0.755 3.02 -- 0.0754 0.345 -- -- 0.0955 10.3 24.2 98 -- --
266.38 0.763 3.06 0.379 -- -- -- -- -0.0289 -- -- -- -- --
268.74 0.767 3.06 -- 0.165 -- -- -- -0.0746 4.94 -- -- -- --
262.99 0.755 3.03 -- -- 0.304 -- -- 0.0755 -- 24.2 98 -- --
270.17 0.767 3.07 -- -- -- -- -- -0.071 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 249.69 temperature 10 90 > th dose dependent rect. 5 22
3 250.16 temperature 10 30 > th dose dependent rect. 17 23
8 250.84 radiation 1 10 < th dose independent rect. 5 1
9 250.86 wind 7 90 > th dose independent rect. 8 1
10 250.89 wind 7 90 > th dose dependent rect. 8 1
23 251.34 wind 7 90 > th dose independent rect. 1 8
29 251.85 radiation 1 10 < th dose dependent rect. 5 1
30 251.91 wind 1 90 < th dose independent rect. 2 3
36 252.46 wind 1 90 < th dose dependent rect. 2 3
46 252.74 temperature 30 30 < th dose dependent rect. 2 22
54 253.01 temperature 25 30 > th dose independent rect. 17 23
58 253.15 temperature 25 10 < th dose independent rect. 3 21
60 253.19 atmosphere 1000 10 < th dose independent rect. 3 1
67 253.19 atmosphere 1000 10 < th dose dependent rect. 3 1
96 253.38 temperature 30 30 < th dose dependent rect. 9 21
103 253.45 temperature 10 270 > th dose dependent rect. 3 22
129 253.85 temperature 25 30 < th dose independent rect. 17 22
130 253.86 atmosphere 995 4320 > th dose independent rect. 5 1
146 254.12 temperature 25 10 > th dose independent rect. 5 23
154 254.20 temperature 30 10 < th dose dependent rect. 16 14
157 254.24 temperature 25 30 < th dose independent rect. 8 22
167 254.31 temperature 25 10 < th dose independent rect. 5 18
188 254.49 temperature 30 30 < th dose dependent rect. 16 22
203 254.67 wind 1 90 < th dose dependent rect. 2 21
208 254.72 temperature 25 10 > th dose independent rect. 23 23
209 254.72 temperature 25 10 < th dose independent rect. 13 23
215 254.76 temperature 25 30 < th dose independent rect. 20 19
225 254.78 temperature 25 30 < th dose independent rect. 21 23
233 254.82 temperature 25 30 < th dose independent no NA NA
245 254.84 temperature 25 30 < th dose independent rect. 19 23
265 254.93 temperature 25 30 < th dose independent rect. 23 23
268 254.95 humidity 90 30 < th dose independent rect. 24 21
287 255.04 temperature 25 30 < th dose independent rect. 17 18
288 255.05 temperature 15 10 > th dose dependent rect. 23 23
294 255.08 temperature 20 10 > th dose dependent sin 8 NA
312 255.13 temperature 25 30 < th dose independent sin 7 NA
331 255.20 temperature 25 30 < th dose independent rect. 20 15
335 255.20 temperature 30 30 < th dose dependent rect. 21 22
340 255.23 temperature 25 10 > th dose independent no NA NA
347 255.24 temperature 25 10 > th dose independent rect. 3 23
348 255.25 atmosphere 1005 30 > th dose independent rect. 16 1
352 255.26 radiation 1 14400 < th dose independent rect. 12 5
353 255.26 radiation 1 14400 > th dose independent rect. 11 6
358 255.26 atmosphere 1015 90 < th dose independent rect. 5 23
363 255.27 atmosphere 1005 30 > th dose dependent rect. 16 1
367 255.29 temperature 25 270 < th dose independent rect. 19 16
369 255.29 temperature 25 10 > th dose independent rect. 13 23
371 255.29 temperature 30 10 < th dose dependent rect. 16 20
384 255.33 temperature 25 10 < th dose independent rect. 3 12
390 255.36 temperature 10 30 > th dose dependent no NA NA
394 255.37 humidity 60 90 > th dose independent rect. 16 13
396 255.37 temperature 25 10 < th dose independent rect. 5 23
400 255.38 temperature 30 30 < th dose independent rect. 16 1
408 255.40 humidity 60 30 > th dose independent rect. 16 1
417 255.42 temperature 30 30 < th dose independent rect. 16 14
445 255.47 temperature 25 10 > th dose independent rect. 9 23
447 255.47 wind 1 90 < th dose dependent rect. 2 10
454 255.48 humidity 50 30 > th dose dependent rect. 16 1
481 255.52 temperature 15 270 > th dose dependent rect. 21 11
500 255.57 temperature 25 10 > th dose independent rect. 23 17
502 255.57 radiation 1 14400 < th dose dependent rect. 14 3
512 255.60 wind 7 30 > th dose independent rect. 16 1
539 255.63 temperature 20 10 > th dose dependent rect. 23 10
553 255.67 radiation 10 10 < th dose independent rect. 16 1
599 255.76 temperature 25 30 > th dose independent sin 7 NA
606 255.77 temperature 25 10 > th dose independent rect. 5 17
612 255.78 humidity 50 10 > th dose dependent rect. 16 14
613 255.78 temperature 10 10 > th dose dependent rect. 6 15
614 255.78 temperature 20 30 > th dose dependent rect. 23 17
631 255.82 temperature 30 10 < th dose dependent rect. 12 18
637 255.83 temperature 25 30 < th dose dependent rect. 20 19
647 255.84 temperature 25 10 > th dose independent rect. 11 23
649 255.85 wind 1 90 < th dose independent rect. 2 10
662 255.86 temperature 30 30 < th dose dependent rect. 16 1
663 255.86 temperature 30 270 < th dose dependent rect. 19 16
667 255.87 wind 5 30 > th dose dependent rect. 16 1
691 255.90 temperature 30 10 < th dose dependent rect. 13 23
695 255.91 temperature 25 10 < th dose independent rect. 3 15
728 255.95 temperature 30 30 < th dose dependent no NA NA
730 255.96 atmosphere 1015 43200 > th dose independent rect. 23 1
732 255.96 humidity 60 10 > th dose independent rect. 16 14
735 255.96 atmosphere 1000 90 > th dose dependent rect. 4 1
740 255.97 atmosphere 1015 43200 < th dose independent rect. 23 1
762 256.01 atmosphere 1000 90 > th dose independent rect. 4 1
768 256.01 temperature 30 30 < th dose dependent rect. 11 23
807 256.06 temperature 25 30 < th dose dependent rect. 23 23
833 256.10 temperature 25 10 > th dose independent rect. 17 19
836 256.10 temperature 30 30 < th dose dependent sin 8 NA
846 256.11 wind 1 270 < th dose dependent rect. 21 8
882 256.15 wind 1 90 < th dose dependent rect. 17 12
907 256.18 atmosphere 1005 10 > th dose dependent rect. 16 8
927 256.21 atmosphere 1015 43200 > th dose dependent rect. 23 1
947 256.23 radiation 10 10 < th dose dependent rect. 16 1
969 256.25 temperature 20 10 > th dose dependent rect. 13 23
997 256.29 temperature 25 10 < th dose independent rect. 5 10