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Os03g0679700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thiamine biosynthesis protein thiC.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.033) R2 : 0.954
β1 : -2.02 (0.119) R2dD : 0.0305 R2D : 0.0179
β2 : 5.08 (0.136) R2dC : 0.36 R2C : 0.729
β3 : -3.22 (0.132) R2dE : 0.157 R2E : 0.535
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.989 (0.071) R2dN8 : 0.0253 R2N8 : 0.03
σ : 0.608
deviance : 170.38
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C
peak time of C : 17.6
E
wheather : temperature
threshold : 19.6
memory length : 292
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.817
open length of G : 6.77

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.92 0.607 11.6 -2.12 5.05 -3.16 1.19 -0.701 -0.987 17.5 19.8 274 0.916 6.98
166.92 0.602 11.6 -2.02 5.03 -3.2 1.39 -- -0.96 17.5 19.8 277 0.883 6.98
168.97 0.605 11.6 -2.18 5.04 -3.19 -- -0.91 -0.995 17.6 19.8 276 0.844 6.92
170.38 0.608 11.6 -2.02 5.08 -3.22 -- -- -0.989 17.6 19.6 292 0.817 6.77
494.83 1.04 11.5 -1.74 -- -6.34 -- 1.04 -0.902 -- 9.633 269 0.0139 8.28
373.5 0.906 11.7 -2.27 7.67 -- 1.8 -- -1.33 17.8 -- -- -- --
381.47 0.915 11.7 -2.29 7.68 -- -- -- -1.32 17.8 -- -- -- --
478.79 1.02 11.5 -2.15 -- -6.36 -- -- -1.02 -- 9.437 271 0.0049 8.22
266.68 0.761 11.5 -- 4.56 -3.75 -- -- -0.694 17.5 19.19 341 0.00132 7.17
3441.78 2.74 11.6 -2.52 -- -- -- -- -1.5 -- -- -- -- --
519.4 1.07 11.7 -- 7.72 -- -- -- -1.07 17.8 -- -- -- --
600.14 1.14 11.4 -- -- -6.42 -- -- -0.769 -- 9.736 274 0.0166 8.17
3609.59 2.8 11.5 -- -- -- -- -- -1.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.55 temperature 20.0 270 > th dose independent rect. 1 7
5 186.98 temperature 20.0 270 > th dose independent rect. 13 18
7 191.80 humidity 70.0 270 > th dose dependent rect. 1 7
9 192.65 temperature 15.0 270 > th dose dependent rect. 1 7
16 195.80 humidity 80.0 270 > th dose independent rect. 1 7
86 218.61 humidity 90.0 270 < th dose independent rect. 20 17
139 227.14 precipitation 0.1 270 < th dose independent rect. 8 17
140 227.14 precipitation 0.1 270 < th dose dependent rect. 8 17
144 227.46 humidity 70.0 270 > th dose dependent sin 8 NA
160 229.52 humidity 80.0 270 > th dose dependent rect. 1 19
162 229.59 radiation 40.0 270 < th dose dependent rect. 1 7
170 230.12 humidity 90.0 270 > th dose independent rect. 3 2
173 230.22 radiation 20.0 270 < th dose independent rect. 1 7
176 230.33 humidity 80.0 270 > th dose dependent rect. 24 21
187 231.22 wind 9.0 270 < th dose dependent rect. 1 7
215 233.52 temperature 20.0 270 > th dose independent rect. 2 17
231 234.38 precipitation 0.1 270 < th dose independent rect. 21 15
232 234.38 precipitation 0.1 270 < th dose dependent rect. 21 15
233 234.39 temperature 20.0 10 > th dose independent rect. 2 7
237 234.48 temperature 20.0 270 > th dose independent rect. 1 19
240 234.64 precipitation 0.1 270 < th dose independent rect. 18 8
242 234.64 precipitation 0.1 270 < th dose dependent rect. 18 8
243 234.65 wind 9.0 270 < th dose independent rect. 8 17
250 235.37 temperature 10.0 270 > th dose independent rect. 1 7
252 235.37 temperature 30.0 270 < th dose independent rect. 1 7
253 235.37 humidity 50.0 270 > th dose independent rect. 1 7
255 235.37 atmosphere 995.0 270 > th dose independent rect. 1 7
256 235.37 atmosphere 1015.0 270 < th dose independent rect. 1 7
257 235.37 temperature 10.0 270 > th dose independent rect. 8 17
259 235.41 wind 9.0 270 < th dose independent rect. 1 7
265 235.66 atmosphere 1010.0 270 < th dose independent rect. 12 9
286 236.45 radiation 40.0 270 < th dose independent rect. 13 17
328 238.30 temperature 15.0 10 > th dose dependent rect. 2 7
360 239.84 radiation 40.0 90 < th dose dependent rect. 15 18
361 239.87 humidity 90.0 270 < th dose independent sin 7 NA
370 240.16 humidity 90.0 270 > th dose independent rect. 1 20
372 240.19 temperature 15.0 270 > th dose independent rect. 12 9
373 240.22 precipitation 0.1 270 < th dose independent rect. 1 7
374 240.22 precipitation 0.1 270 < th dose dependent rect. 1 7
397 240.65 wind 3.0 270 < th dose independent rect. 1 6
398 240.72 wind 1.0 270 > th dose independent rect. 8 17
418 241.57 radiation 1.0 270 > th dose independent rect. 6 8
426 241.86 wind 9.0 270 < th dose independent rect. 19 7
431 242.01 radiation 1.0 270 < th dose dependent rect. 19 7
432 242.02 temperature 10.0 270 > th dose independent rect. 19 7
433 242.02 temperature 30.0 270 < th dose independent rect. 19 7
434 242.02 humidity 50.0 270 > th dose independent rect. 19 7
435 242.02 atmosphere 995.0 270 > th dose independent rect. 19 7
436 242.02 radiation 1.0 270 < th dose independent rect. 19 7
441 242.02 temperature 10.0 270 > th dose independent rect. 2 17
443 242.02 atmosphere 1015.0 270 < th dose independent rect. 2 17
463 242.44 wind 9.0 270 < th dose independent rect. 21 15
474 242.78 humidity 90.0 270 < th dose independent rect. 1 12
483 243.11 temperature 10.0 270 > th dose independent rect. 21 15
484 243.11 atmosphere 995.0 270 > th dose independent rect. 21 15
498 243.70 atmosphere 1015.0 270 < th dose independent rect. 13 18
531 244.20 precipitation 0.1 270 < th dose independent rect. 7 6
532 244.20 precipitation 0.1 270 < th dose dependent rect. 7 6
533 244.21 precipitation 0.1 270 < th dose independent rect. 6 8
534 244.21 precipitation 0.1 270 < th dose dependent rect. 6 8
536 244.26 wind 9.0 270 < th dose independent rect. 7 6
541 244.32 wind 1.0 270 > th dose independent rect. 20 16
555 244.53 temperature 10.0 270 > th dose independent rect. 7 6
556 244.53 atmosphere 995.0 270 > th dose independent rect. 7 6
557 244.53 atmosphere 1015.0 270 < th dose independent rect. 7 6
564 244.77 wind 9.0 270 < th dose independent rect. 6 8
566 244.79 atmosphere 995.0 270 > th dose independent rect. 8 17
576 244.96 temperature 10.0 270 > th dose independent rect. 6 8
577 244.96 atmosphere 995.0 270 > th dose independent rect. 6 8
578 244.96 atmosphere 1015.0 270 < th dose independent rect. 6 8
580 244.99 wind 9.0 270 < th dose independent rect. 2 17
641 246.21 wind 9.0 270 < th dose independent rect. 12 9
649 246.33 wind 1.0 270 > th dose independent rect. 19 7
655 246.48 wind 9.0 270 < th dose independent rect. 13 18
658 246.50 temperature 10.0 270 > th dose dependent rect. 13 18
688 247.23 wind 9.0 270 < th dose independent rect. 14 16
747 248.15 humidity 50.0 270 > th dose independent rect. 7 6
751 248.33 radiation 1.0 270 < th dose independent rect. 2 16
790 249.25 wind 1.0 270 > th dose independent rect. 7 6
791 249.27 humidity 50.0 270 > th dose independent rect. 20 16
792 249.27 temperature 10.0 10 > th dose dependent rect. 15 18
817 249.84 radiation 40.0 90 < th dose independent rect. 13 9
819 249.85 radiation 1.0 270 < th dose independent sin 2 NA
840 250.13 humidity 60.0 10 > th dose dependent rect. 4 6
844 250.18 precipitation 0.1 270 < th dose independent rect. 2 17
845 250.18 precipitation 0.1 270 < th dose dependent rect. 2 17
860 250.33 radiation 10.0 270 < th dose dependent rect. 2 16
871 250.57 wind 1.0 30 > th dose independent rect. 23 16
875 250.61 radiation 20.0 90 < th dose independent rect. 15 18
984 252.08 radiation 1.0 270 > th dose independent sin 2 NA