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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0678800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 8 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.017) R2 : 0.0115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0826 (0.0358) R2dN8 : 0.0149 R2N8 : 0.0115
σ : 0.32
deviance : 47.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.5 0.313 3.03 -0.036 0.156 0.0371 -0.415 0.761 0.0693 5.78 64 4455 -- --
45.03 0.313 3.03 -0.0108 0.153 0.148 -0.444 -- 0.0558 5.68 70.39 4210 -- --
44.85 0.312 3.03 -0.0364 0.155 0.0267 -- 0.789 0.0676 6.1 64.67 4953 -- --
45.45 0.314 3.03 -0.0124 0.153 0.147 -- -- 0.0568 6.28 70.62 4193 -- --
46.05 0.316 3.03 -0.0206 -- -0.0149 -- 0.842 0.0676 -- 65 4936 -- --
45.4 0.316 3.03 -0.00895 0.157 -- -0.429 -- 0.0764 5.63 -- -- -- --
45.83 0.317 3.02 -0.0105 0.156 -- -- -- 0.0784 6.08 -- -- -- --
46.67 0.318 3.03 -0.00687 -- 0.147 -- -- 0.0599 -- 71 4210 -- --
45.45 0.314 3.03 -- 0.152 0.149 -- -- 0.0582 6.28 70.49 4193 -- --
47.09 0.321 3.03 -0.00607 -- -- -- -- 0.0819 -- -- -- -- --
45.83 0.317 3.02 -- 0.156 -- -- -- 0.0795 6.08 -- -- -- --
46.67 0.318 3.03 -- -- 0.157 -- -- 0.0607 -- 70.47 4210 -- --
47.09 0.32 3.03 -- -- -- -- -- 0.0826 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.20 temperature 25.0 270 > th dose independent rect. 2 1
5 42.23 temperature 25.0 90 > th dose independent rect. 1 4
6 42.23 temperature 25.0 270 > th dose dependent rect. 2 1
7 42.23 atmosphere 1005.0 30 > th dose dependent rect. 2 3
14 42.42 atmosphere 1005.0 270 > th dose dependent rect. 2 1
17 42.57 atmosphere 1005.0 270 > th dose dependent rect. 1 3
24 42.91 humidity 90.0 10 < th dose independent rect. 4 1
29 42.96 atmosphere 1000.0 30 > th dose dependent rect. 2 6
33 43.01 humidity 90.0 10 < th dose dependent rect. 4 1
35 43.08 radiation 10.0 10 > th dose independent rect. 6 1
62 43.08 radiation 10.0 10 > th dose dependent rect. 6 1
90 43.10 temperature 25.0 10 > th dose independent rect. 4 3
91 43.11 atmosphere 1005.0 10 > th dose dependent rect. 4 1
107 43.25 wind 1.0 30 > th dose independent rect. 4 1
117 43.33 wind 5.0 30 < th dose dependent rect. 2 6
118 43.34 temperature 25.0 90 > th dose independent rect. 4 1
121 43.34 temperature 10.0 30 > th dose dependent rect. 2 6
123 43.35 atmosphere 1005.0 10 > th dose independent rect. 4 1
128 43.37 atmosphere 1005.0 30 > th dose independent rect. 2 3
129 43.37 atmosphere 1000.0 30 > th dose independent rect. 8 18
130 43.37 temperature 25.0 90 > th dose dependent rect. 4 1
135 43.38 temperature 30.0 30 < th dose dependent rect. 4 1
138 43.39 wind 1.0 30 > th dose dependent rect. 4 1
141 43.40 wind 5.0 30 < th dose independent rect. 4 1
143 43.40 wind 7.0 1440 < th dose independent rect. 5 1
145 43.40 temperature 10.0 1440 > th dose independent rect. 5 1
148 43.40 temperature 30.0 1440 < th dose independent rect. 5 1
152 43.40 humidity 50.0 1440 > th dose independent rect. 5 1
161 43.40 atmosphere 995.0 1440 > th dose independent rect. 5 1
162 43.40 atmosphere 1015.0 1440 < th dose independent rect. 5 1
163 43.40 radiation 20.0 1440 < th dose independent rect. 5 1
172 43.40 wind 5.0 30 < th dose independent rect. 2 6
173 43.40 temperature 10.0 1440 > th dose independent rect. 6 23
178 43.41 temperature 10.0 30 > th dose independent rect. 4 1
180 43.41 temperature 30.0 30 < th dose independent rect. 4 1
181 43.41 humidity 50.0 30 > th dose independent rect. 4 1
184 43.41 atmosphere 995.0 30 > th dose independent rect. 4 1
186 43.41 atmosphere 1010.0 30 < th dose independent rect. 4 1
188 43.41 radiation 1.0 30 < th dose independent rect. 4 1
193 43.41 temperature 10.0 30 > th dose independent rect. 5 23
194 43.41 radiation 1.0 30 < th dose dependent rect. 4 1
201 43.42 precipitation 0.1 30 < th dose independent rect. 4 1
203 43.42 precipitation 0.1 30 < th dose dependent rect. 4 1
205 43.43 wind 9.0 30 < th dose dependent rect. 4 1
206 43.43 temperature 10.0 30 > th dose dependent rect. 4 1
213 43.44 humidity 50.0 30 > th dose dependent rect. 4 1
250 43.48 atmosphere 1015.0 30 < th dose dependent rect. 4 1
255 43.50 atmosphere 995.0 720 > th dose independent rect. 23 16
273 43.54 humidity 50.0 30 > th dose independent rect. 8 18
278 43.56 wind 9.0 1440 < th dose independent rect. 3 6
279 43.56 temperature 10.0 1440 > th dose independent rect. 3 6
282 43.56 humidity 50.0 1440 > th dose independent rect. 3 6
284 43.56 atmosphere 995.0 1440 > th dose independent rect. 3 6
285 43.56 precipitation 0.1 30 < th dose independent rect. 2 6
286 43.56 temperature 10.0 1440 > th dose independent rect. 9 18
291 43.56 precipitation 0.1 30 < th dose dependent rect. 2 6
296 43.58 temperature 10.0 30 > th dose independent rect. 2 6
298 43.58 temperature 30.0 30 < th dose independent rect. 2 6
299 43.58 humidity 50.0 30 > th dose independent rect. 2 6
301 43.58 atmosphere 995.0 30 > th dose independent rect. 2 6
303 43.58 atmosphere 1015.0 30 < th dose independent rect. 2 6
304 43.58 temperature 10.0 30 > th dose independent rect. 8 18
308 43.59 precipitation 0.1 30 < th dose independent rect. 8 18
310 43.59 precipitation 0.1 30 < th dose dependent rect. 8 18
313 43.60 precipitation 0.1 720 < th dose independent rect. 15 8
317 43.60 precipitation 0.1 720 < th dose dependent rect. 15 8
329 43.62 radiation 40.0 30 < th dose independent rect. 2 6
336 43.63 temperature 25.0 720 < th dose independent rect. 21 5
338 43.63 wind 9.0 30 < th dose independent rect. 8 18
357 43.67 temperature 25.0 720 > th dose independent rect. 20 2
371 43.70 temperature 30.0 30 < th dose independent rect. 8 18
372 43.70 precipitation 0.1 30 < th dose independent rect. 5 23
377 43.70 precipitation 0.1 30 < th dose dependent rect. 5 23
379 43.71 temperature 10.0 720 > th dose independent rect. 15 8
380 43.71 temperature 10.0 720 > th dose independent rect. 23 16
382 43.72 temperature 30.0 270 < th dose independent rect. 10 11
388 43.72 temperature 25.0 720 > th dose dependent rect. 20 2
395 43.74 temperature 25.0 90 < th dose independent rect. 6 1
398 43.74 wind 1.0 30 > th dose independent rect. 8 18
401 43.75 atmosphere 995.0 30 > th dose independent rect. 5 23
402 43.77 temperature 25.0 720 < th dose independent rect. 23 2
406 43.78 temperature 25.0 10 > th dose independent rect. 20 11
417 43.79 humidity 50.0 720 > th dose independent rect. 3 8
424 43.80 humidity 80.0 10 > th dose independent rect. 2 7
425 43.80 temperature 25.0 720 > th dose independent rect. 19 8
426 43.80 precipitation 0.1 720 < th dose independent rect. 11 16
432 43.80 precipitation 0.1 720 < th dose dependent rect. 11 16
433 43.81 wind 1.0 90 > th dose independent rect. 2 6
435 43.81 wind 9.0 30 < th dose independent rect. 5 23
441 43.83 atmosphere 1000.0 30 > th dose independent rect. 23 3
449 43.83 temperature 10.0 30 > th dose dependent rect. 23 3
457 43.84 temperature 10.0 720 > th dose independent rect. 3 8
458 43.84 atmosphere 995.0 720 > th dose independent rect. 3 8
459 43.84 temperature 10.0 720 > th dose independent rect. 11 16
462 43.84 radiation 40.0 10 < th dose dependent rect. 2 6
464 43.84 atmosphere 995.0 30 > th dose dependent rect. 8 18
465 43.85 humidity 90.0 90 < th dose independent rect. 2 3
469 43.85 radiation 20.0 30 < th dose independent rect. 2 6
484 43.86 atmosphere 995.0 720 > th dose independent rect. 15 8
486 43.86 radiation 10.0 14400 < th dose dependent rect. 24 3
498 43.87 humidity 50.0 30 > th dose dependent rect. 2 6
499 43.88 wind 3.0 30 < th dose independent rect. 2 3
511 43.88 atmosphere 995.0 30 > th dose dependent rect. 8 11
518 43.89 wind 1.0 90 > th dose independent rect. 1 22
519 43.89 temperature 30.0 14400 > th dose dependent rect. 8 1
544 43.90 atmosphere 1000.0 720 > th dose independent rect. 21 14
560 43.92 temperature 25.0 10 > th dose independent rect. 22 9
561 43.92 precipitation 0.1 30 < th dose independent rect. 2 21
568 43.92 precipitation 0.1 30 < th dose dependent rect. 2 21
569 43.92 radiation 1.0 90 < th dose dependent rect. 1 22
571 43.93 temperature 10.0 1440 > th dose independent rect. 24 3
578 43.93 humidity 50.0 1440 > th dose independent rect. 24 3
589 43.93 atmosphere 995.0 1440 > th dose independent rect. 24 3
590 43.93 radiation 1.0 1440 < th dose independent rect. 24 3
610 43.93 atmosphere 1000.0 720 > th dose independent rect. 23 10
611 43.93 atmosphere 995.0 270 > th dose independent rect. 10 11
612 43.93 temperature 10.0 1440 > th dose independent rect. 3 21
615 43.93 atmosphere 995.0 720 > th dose independent rect. 1 22
616 43.93 radiation 1.0 30 > th dose independent rect. 8 22
617 43.93 wind 3.0 30 < th dose dependent rect. 6 1
627 43.93 wind 9.0 30 < th dose dependent rect. 19 13
642 43.95 temperature 30.0 14400 > th dose independent rect. 8 1
644 43.95 wind 7.0 30 < th dose independent rect. 23 3
647 43.95 temperature 10.0 30 > th dose independent rect. 23 3
648 43.95 temperature 30.0 30 < th dose independent rect. 23 3
649 43.95 humidity 50.0 30 > th dose independent rect. 23 3
653 43.95 radiation 1.0 30 < th dose independent rect. 23 3
658 43.95 precipitation 0.1 30 < th dose independent rect. 23 3
671 43.95 temperature 10.0 30 > th dose independent rect. 2 21
673 43.95 atmosphere 1015.0 30 < th dose independent rect. 2 21
674 43.95 atmosphere 1005.0 30 > th dose dependent rect. 6 1
675 43.95 radiation 1.0 30 < th dose dependent rect. 23 3
682 43.95 precipitation 0.1 30 < th dose dependent rect. 23 3
689 43.96 wind 9.0 30 < th dose independent rect. 2 21
692 43.96 temperature 20.0 90 < th dose dependent rect. 6 1
694 43.96 temperature 25.0 720 > th dose dependent rect. 5 4
698 43.97 wind 9.0 720 < th dose independent rect. 3 8
699 43.97 atmosphere 995.0 720 > th dose independent rect. 11 16
701 43.97 atmosphere 1015.0 30 < th dose independent rect. 8 18
713 43.98 temperature 25.0 1440 < th dose independent rect. 1 1
736 43.98 wind 5.0 30 < th dose dependent rect. 2 3
765 43.99 atmosphere 1000.0 30 > th dose independent rect. 5 21
772 44.00 wind 1.0 90 > th dose independent rect. 23 2
807 44.00 radiation 20.0 90 < th dose dependent rect. 1 22
815 44.01 atmosphere 1000.0 30 > th dose independent rect. 8 11
827 44.01 radiation 40.0 90 < th dose dependent rect. 1 22
830 44.02 temperature 30.0 14400 < th dose independent rect. 24 9
831 44.02 atmosphere 1000.0 90 > th dose independent rect. 23 12
851 44.03 radiation 1.0 43200 < th dose dependent rect. 3 1
858 44.04 temperature 30.0 14400 < th dose independent rect. 6 3
872 44.04 atmosphere 995.0 30 > th dose independent rect. 2 21
879 44.05 atmosphere 1000.0 720 > th dose independent rect. 11 2
882 44.05 humidity 50.0 10 > th dose independent rect. 2 21
884 44.05 atmosphere 1000.0 30 > th dose independent rect. 3 23
886 44.05 atmosphere 995.0 30 > th dose dependent rect. 23 3
892 44.06 temperature 30.0 14400 < th dose independent rect. 8 1
898 44.06 humidity 50.0 270 > th dose independent rect. 21 13
899 44.06 radiation 1.0 30 < th dose independent rect. 2 21
901 44.06 wind 9.0 30 < th dose dependent rect. 23 3
912 44.07 wind 1.0 720 > th dose independent rect. 15 8
916 44.07 temperature 30.0 14400 < th dose independent rect. 19 14
918 44.07 atmosphere 995.0 720 > th dose independent rect. 13 22
927 44.08 temperature 30.0 720 < th dose independent rect. 11 2
936 44.08 temperature 10.0 270 > th dose independent rect. 10 11
939 44.08 temperature 10.0 270 > th dose independent rect. 21 13
953 44.09 wind 9.0 720 < th dose independent rect. 23 2
980 44.09 temperature 10.0 720 > th dose independent rect. 1 22
999 44.10 precipitation 0.1 720 < th dose independent rect. 23 2