Os03g0678100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0678100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.46 | 0.452 | 10.4 | 0.877 | 0.709 | 0.997 | 0.459 | -0.00315 | 0.177 | 6.8 | 79.76 | 1051 | -- | -- |
| 92.46 | 0.448 | 10.4 | 0.877 | 0.71 | 0.997 | 0.459 | -- | 0.176 | 6.81 | 79.86 | 1050 | -- | -- |
| 92.97 | 0.449 | 10.4 | 0.887 | 0.699 | 0.994 | -- | -0.0733 | 0.173 | 6.86 | 80.41 | 1060 | -- | -- |
| 92.94 | 0.449 | 10.4 | 0.913 | 0.707 | 1.02 | -- | -- | 0.156 | 6.98 | 84.7 | 1063 | -- | -- |
| 111.85 | 0.493 | 10.4 | 0.96 | -- | 0.954 | -- | 0.116 | 0.154 | -- | 87.01 | 1267 | -- | -- |
| 110.91 | 0.494 | 10.4 | 1.04 | 0.641 | -- | 0.563 | -- | 0.139 | 5.34 | -- | -- | -- | -- |
| 111.69 | 0.495 | 10.4 | 1.04 | 0.645 | -- | -- | -- | 0.136 | 5.43 | -- | -- | -- | -- |
| 111.83 | 0.493 | 10.4 | 0.944 | -- | 0.955 | -- | -- | 0.154 | -- | 86.62 | 1264 | -- | -- |
| 112.65 | 0.494 | 10.4 | -- | 0.7 | 1.16 | -- | -- | 0.105 | 6.92 | 77.07 | 1084 | -- | -- |
| 133.36 | 0.54 | 10.4 | 1.06 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 140.19 | 0.554 | 10.4 | -- | 0.662 | -- | -- | -- | 0.0206 | 5.36 | -- | -- | -- | -- |
| 133.36 | 0.538 | 10.4 | -- | -- | 1.08 | -- | -- | 0.0982 | -- | 79.2 | 1244 | -- | -- |
| 163.08 | 0.596 | 10.4 | -- | -- | -- | -- | -- | 0.0345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.84 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 2 | 90.11 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 83 | 92.95 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 108 | 93.36 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 122 | 93.53 | wind | 3.0 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 140 | 93.87 | wind | 3.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 142 | 93.88 | humidity | 90.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 155 | 93.95 | humidity | 50.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 167 | 94.06 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 193 | 94.16 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 195 | 94.18 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 216 | 94.44 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 223 | 94.52 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 248 | 94.73 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 10 |
| 269 | 94.79 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 280 | 94.79 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 307 | 94.90 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 335 | 95.02 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 337 | 95.04 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 339 | 95.06 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 8 |
| 341 | 95.08 | humidity | 70.0 | 720 | < th | dose independent | sin | 12 | NA |
| 348 | 95.12 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 349 | 95.12 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 18 | 6 |
| 355 | 95.15 | wind | 5.0 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 368 | 95.22 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 384 | 95.31 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 416 | 95.43 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 423 | 95.44 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 436 | 95.50 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 457 | 95.58 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 458 | 95.58 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 459 | 95.59 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 2 |
| 460 | 95.59 | wind | 3.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 462 | 95.59 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 466 | 95.60 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 469 | 95.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 477 | 95.66 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 480 | 95.67 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 481 | 95.68 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 482 | 95.69 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 490 | 95.72 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 17 |
| 510 | 95.74 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 4 |
| 512 | 95.74 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 513 | 95.74 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 570 | 95.93 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 602 | 96.03 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 628 | 96.09 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 646 | 96.10 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 650 | 96.12 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 668 | 96.16 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 696 | 96.21 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 19 | 17 |
| 748 | 96.32 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 766 | 96.35 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 770 | 96.37 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 774 | 96.37 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 781 | 96.39 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 787 | 96.39 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 814 | 96.44 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 874 | 96.51 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 875 | 96.52 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 920 | 96.57 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 923 | 96.58 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 937 | 96.60 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 944 | 96.60 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 949 | 96.61 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 950 | 96.61 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 967 | 96.62 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 992 | 96.63 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 995 | 96.64 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 996 | 96.64 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |