Os03g0676400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os03g0676400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 381.71 | 0.918 | 3.57 | -0.0221 | 0.545 | 3.61 | -0.448 | -7.28 | 0.485 | 0.599 | 6.205 | 59 | 5.45 | -- |
| 382.82 | 0.911 | 3.59 | 0.024 | 0.564 | 5.23 | -0.463 | -- | 0.478 | 0.742 | 6.13 | 59 | 5.47 | -- |
| 382.55 | 0.911 | 3.57 | -0.00354 | 0.547 | 3.65 | -- | -7.06 | 0.486 | 0.683 | 6.2 | 59 | 5.52 | -- |
| 383.55 | 0.912 | 3.59 | 0.0518 | 0.546 | 5.2 | -- | -- | 0.481 | 0.784 | 6.199 | 59 | 5.56 | -- |
| 401.22 | 0.933 | 3.56 | 0.0203 | -- | 3.75 | -- | -7.02 | 0.499 | -- | 6.2 | 59 | 5.48 | -- |
| 444.78 | 0.989 | 3.62 | -0.228 | 0.599 | -- | -0.797 | -- | 0.392 | 23.1 | -- | -- | -- | -- |
| 447.33 | 0.99 | 3.61 | -0.198 | 0.603 | -- | -- | -- | 0.394 | 23.4 | -- | -- | -- | -- |
| 402.15 | 0.934 | 3.58 | 0.0742 | -- | 5.29 | -- | -- | 0.491 | -- | 6.2 | 59 | 5.49 | -- |
| 383.62 | 0.912 | 3.59 | -- | 0.547 | 5.16 | -- | -- | 0.474 | 0.795 | 6.197 | 59 | 5.57 | -- |
| 470.12 | 1.01 | 3.6 | -0.182 | -- | -- | -- | -- | 0.4 | -- | -- | -- | -- | -- |
| 448.36 | 0.99 | 3.61 | -- | 0.601 | -- | -- | -- | 0.416 | 23.4 | -- | -- | -- | -- |
| 402.3 | 0.934 | 3.58 | -- | -- | 5.25 | -- | -- | 0.483 | -- | 6.2 | 59 | 5.49 | -- |
| 470.99 | 1.01 | 3.6 | -- | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 385.99 | wind | 7 | 90 | < th | dose independent | sin | 12 | NA |
| 2 | 386.10 | wind | 7 | 90 | > th | dose independent | sin | 12 | NA |
| 8 | 389.10 | wind | 7 | 90 | > th | dose dependent | sin | 11 | NA |
| 14 | 392.47 | wind | 7 | 90 | > th | dose independent | rect. | 17 | 11 |
| 46 | 395.62 | wind | 9 | 10 | > th | dose independent | sin | 11 | NA |
| 54 | 396.41 | wind | 7 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 62 | 396.62 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 101 | 399.08 | wind | 5 | 90 | > th | dose dependent | rect. | 15 | 13 |
| 176 | 401.78 | wind | 7 | 720 | > th | dose independent | rect. | 15 | 3 |
| 179 | 401.92 | wind | 7 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 180 | 401.92 | radiation | 1 | 10 | < th | dose dependent | rect. | 7 | 7 |
| 210 | 402.48 | wind | 7 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 212 | 402.55 | wind | 7 | 720 | > th | dose independent | rect. | 16 | 1 |
| 213 | 402.58 | radiation | 1 | 10 | < th | dose independent | rect. | 7 | 7 |
| 216 | 402.65 | wind | 7 | 90 | > th | dose dependent | rect. | 17 | 7 |
| 300 | 403.64 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 9 |
| 313 | 403.75 | wind | 7 | 720 | > th | dose dependent | sin | 18 | NA |
| 411 | 404.53 | wind | 9 | 720 | < th | dose independent | sin | 18 | NA |
| 423 | 404.59 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 10 |
| 442 | 404.89 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 1 |
| 501 | 405.12 | wind | 7 | 720 | < th | dose independent | rect. | 11 | 12 |
| 511 | 405.18 | radiation | 1 | 90 | < th | dose independent | rect. | 7 | 8 |
| 567 | 405.35 | radiation | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 569 | 405.35 | radiation | 1 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 635 | 405.73 | wind | 7 | 720 | < th | dose independent | rect. | 11 | 14 |
| 694 | 406.11 | wind | 7 | 720 | < th | dose independent | rect. | 11 | 19 |
| 817 | 406.67 | wind | 9 | 720 | < th | dose independent | rect. | 11 | 16 |
| 912 | 407.21 | wind | 7 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 938 | 407.31 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 5 |
| 970 | 407.49 | wind | 7 | 720 | < th | dose independent | rect. | 11 | 22 |