Os03g0675700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0675700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.09 | 0.316 | 10.2 | -3.56 | 1.14 | -117 | -0.521 | -242 | 0.211 | 15.3 | 15 | 4460 | -- | -- |
| 50.89 | 0.335 | 11.8 | 0.227 | 1.14 | -1.27 | -0.516 | -- | 0.284 | 15.3 | 15 | 4460 | -- | -- |
| 45.94 | 0.316 | 10.2 | -3.57 | 1.14 | -117 | -- | -242 | 0.208 | 15.4 | 15 | 4465 | -- | -- |
| 48.12 | 0.323 | 11.9 | -0.139 | 1.17 | -0.996 | -- | -- | 0.163 | 15.3 | 19.4 | 5942 | -- | -- |
| 117.85 | 0.506 | 10.2 | -3.75 | -- | -116 | -- | -241 | 0.174 | -- | 15.06 | 4857 | -- | -- |
| 53.93 | 0.344 | 11.8 | 0.279 | 1.16 | -- | -0.657 | -- | 0.298 | 15.3 | -- | -- | -- | -- |
| 55.31 | 0.348 | 11.8 | 0.266 | 1.15 | -- | -- | -- | 0.294 | 15.3 | -- | -- | -- | -- |
| 122.29 | 0.517 | 11.9 | 0.0446 | -- | -1.26 | -- | -- | 0.203 | -- | 19.41 | 6053 | -- | -- |
| 48.4 | 0.324 | 11.9 | -- | 1.16 | -0.878 | -- | -- | 0.192 | 15.3 | 19.17 | 5934 | -- | -- |
| 130.54 | 0.534 | 11.8 | 0.217 | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
| 57.17 | 0.354 | 11.9 | -- | 1.15 | -- | -- | -- | 0.264 | 15.3 | -- | -- | -- | -- |
| 122.18 | 0.516 | 11.9 | -- | -- | -1.3 | -- | -- | 0.197 | -- | 19.44 | 4671 | -- | -- |
| 131.79 | 0.536 | 11.9 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 2 | 40.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 3 | 40.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 4 | 40.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 22 | 41.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 23 | 41.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 40 | 41.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 42 | 41.79 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 43 | 41.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 50 | 41.89 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 64 | 42.04 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 68 | 42.09 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 110 | 42.35 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 146 | 42.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 170 | 42.65 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 172 | 42.67 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 186 | 42.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 204 | 42.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 224 | 42.89 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 272 | 43.04 | temperature | 20.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 323 | 43.19 | temperature | 20.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 336 | 43.21 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 343 | 43.23 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 344 | 43.23 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 349 | 43.26 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 385 | 43.33 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 434 | 43.43 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 478 | 43.52 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 486 | 43.54 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 520 | 43.61 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 526 | 43.63 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 597 | 43.75 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 601 | 43.76 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 602 | 43.76 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 637 | 43.81 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 640 | 43.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 661 | 43.85 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 680 | 43.88 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 683 | 43.88 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 730 | 43.94 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 748 | 43.96 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 756 | 43.98 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 856 | 44.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 869 | 44.12 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 870 | 44.12 | wind | 9.0 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 930 | 44.17 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 951 | 44.19 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 959 | 44.19 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 969 | 44.20 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 971 | 44.20 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 979 | 44.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 981 | 44.21 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 987 | 44.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |