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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0675600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phytosulfokines 3 precursor [Contains: Phytosulfokine-alpha (PSK- alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0515) R2 : 0.372
β1 : -1.93 (0.188) R2dD : 0.151 R2D : 0.101
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.11 (0.205) R2dE : 0.0374 R2E : 0.0372
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.82 (0.815) R2dD*E : 0.139 R2D*E : 0.1
γ1 : -0.898 (0.11) R2dN8 : 0.127 R2N8 : 0.0196
σ : 0.943
deviance : 410.28
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C
peak time of C : --
E
wheather : radiation
threshold : 8.75
memory length : 1772
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
397.44 0.937 3.39 -1.74 1.22 -1.57 -3.36 7.92 -0.844 6.16 9.799 547 -- --
464.4 1.01 3.43 -1.8 0.119 -0.485 -3.21 -- -0.699 14.6 9.799 547 -- --
412.15 0.946 3.42 -1.4 0.902 -1.13 -- 6.51 -0.746 5.22 9.843 427 -- --
482.65 1.02 3.46 -1.46 0.932 -1.19 -- -- -0.777 5.16 9.747 421 -- --
410.28 0.943 3.43 -1.93 -- -1.11 -- 6.82 -0.898 -- 8.75 1772 -- --
472.92 1.02 3.44 -1.82 0.642 -- -2.77 -- -0.733 13.2 -- -- -- --
500.9 1.05 3.44 -1.92 0.683 -- -- -- -0.753 11.7 -- -- -- --
495.6 1.04 3.45 -1.86 -- -0.714 -- -- -0.764 -- 9.97 310 -- --
559.78 1.1 3.41 -- 1.25 -1.73 -- -- -0.653 5.07 9.83 409 -- --
530.27 1.08 3.45 -1.94 -- -- -- -- -0.761 -- -- -- -- --
597.78 1.14 3.39 -- 0.707 -- -- -- -0.539 11.9 -- -- -- --
587.39 1.13 3.41 -- -- -0.782 -- -- -0.573 -- 9.84 326 -- --
629.23 1.17 3.41 -- -- -- -- -- -0.546 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 388.96 radiation 40 4320 < th dose independent rect. 15 17
2 391.71 humidity 60 43200 < th dose dependent rect. 19 12
5 392.73 radiation 10 720 < th dose independent rect. 22 15
8 394.18 temperature 15 43200 > th dose independent rect. 6 2
11 394.38 humidity 60 43200 < th dose dependent rect. 19 2
12 394.61 temperature 15 43200 < th dose independent rect. 6 2
13 394.70 radiation 40 14400 < th dose independent rect. 17 15
15 394.81 temperature 15 43200 < th dose dependent rect. 5 4
17 394.83 humidity 60 43200 < th dose dependent rect. 19 14
18 394.85 radiation 10 720 < th dose independent rect. 22 12
27 395.16 temperature 15 43200 < th dose dependent rect. 4 17
28 395.18 radiation 10 720 < th dose independent sin 6 NA
44 395.40 temperature 15 43200 < th dose dependent rect. 4 10
49 395.47 radiation 40 14400 < th dose independent rect. 7 1
56 395.58 temperature 15 43200 < th dose independent rect. 15 1
65 395.70 temperature 15 43200 > th dose independent rect. 15 1
66 395.72 temperature 15 43200 < th dose dependent sin 1 NA
88 396.00 radiation 40 14400 < th dose independent rect. 22 10
92 396.04 temperature 15 43200 < th dose dependent rect. 8 2
98 396.11 radiation 40 14400 < th dose independent rect. 24 8
104 396.17 temperature 15 43200 < th dose dependent rect. 20 1
119 396.40 temperature 15 43200 < th dose independent rect. 12 1
126 396.48 temperature 15 43200 < th dose dependent rect. 17 1
145 396.76 temperature 15 43200 < th dose dependent rect. 16 5
173 397.06 temperature 15 43200 < th dose dependent rect. 8 14
181 397.10 temperature 15 43200 < th dose independent rect. 12 5
191 397.18 radiation 1 270 < th dose independent rect. 8 2
192 397.18 radiation 1 270 < th dose dependent rect. 8 2
226 397.42 radiation 40 14400 < th dose independent rect. 2 6
242 397.53 temperature 15 43200 < th dose independent rect. 5 12
308 397.92 temperature 15 43200 > th dose independent rect. 12 5
368 398.43 temperature 15 43200 < th dose dependent rect. 11 23
369 398.44 temperature 15 43200 < th dose dependent no NA NA
379 398.52 temperature 15 43200 > th dose independent rect. 6 11
381 398.52 temperature 15 43200 < th dose dependent rect. 15 23
383 398.54 temperature 15 43200 < th dose independent sin 0 NA
394 398.60 temperature 15 43200 > th dose independent rect. 5 13
432 398.73 temperature 15 43200 < th dose dependent rect. 8 23
461 398.87 temperature 15 43200 > th dose independent rect. 12 1
550 399.24 humidity 60 43200 < th dose independent rect. 19 11
625 399.57 temperature 15 43200 > th dose independent sin 23 NA
637 399.63 humidity 50 43200 > th dose independent rect. 18 13
663 399.72 temperature 15 43200 < th dose independent rect. 12 21
681 399.81 wind 7 43200 > th dose dependent rect. 24 1
708 399.91 radiation 1 4320 < th dose independent rect. 8 1
712 399.91 radiation 1 4320 < th dose dependent rect. 8 1
763 400.09 temperature 15 43200 < th dose independent rect. 12 12
826 400.31 temperature 20 4320 < th dose dependent rect. 18 1
843 400.38 temperature 15 43200 < th dose independent no NA NA
851 400.40 temperature 15 43200 > th dose independent rect. 12 12
858 400.41 radiation 10 720 < th dose independent rect. 16 21
872 400.46 temperature 15 43200 < th dose independent rect. 19 23
875 400.47 wind 9 43200 < th dose independent rect. 24 1
976 400.78 temperature 15 43200 < th dose independent rect. 12 16