Os03g0675000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0675000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.92 | 0.465 | 3.22 | -0.922 | 0.218 | 0.453 | -0.812 | -0.605 | -0.175 | 0.584 | 31.4 | 1027 | -- | -- |
| 97.75 | 0.46 | 3.2 | -0.848 | 0.216 | 0.378 | -0.833 | -- | -0.172 | 0.355 | 33.09 | 1008 | -- | -- |
| 100.67 | 0.467 | 3.21 | -0.881 | 0.236 | 0.413 | -- | -0.377 | -0.173 | 0.356 | 32.01 | 1022 | -- | -- |
| 100.51 | 0.467 | 3.21 | -0.79 | 0.23 | 0.36 | -- | -- | -0.179 | 0.519 | 33.36 | 1019 | -- | -- |
| 103.62 | 0.474 | 3.21 | -0.825 | -- | 0.436 | -- | -0.199 | -0.167 | -- | 32.46 | 994 | -- | -- |
| 104.21 | 0.479 | 3.23 | -0.745 | 0.277 | -- | -0.713 | -- | -0.238 | 0.516 | -- | -- | -- | -- |
| 106.4 | 0.483 | 3.22 | -0.718 | 0.279 | -- | -- | -- | -0.235 | 0.485 | -- | -- | -- | -- |
| 103.63 | 0.474 | 3.2 | -0.795 | -- | 0.411 | -- | -- | -0.166 | -- | 32.8 | 994 | -- | -- |
| 116.65 | 0.503 | 3.19 | -- | 0.235 | 0.28 | -- | -- | -0.107 | 0.317 | 33.79 | 1016 | -- | -- |
| 111.29 | 0.493 | 3.22 | -0.708 | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
| 119.97 | 0.512 | 3.21 | -- | 0.269 | -- | -- | -- | -0.155 | 0.351 | -- | -- | -- | -- |
| 119.87 | 0.51 | 3.19 | -- | -- | 0.321 | -- | -- | -0.0968 | -- | 33.67 | 1014 | -- | -- |
| 124.52 | 0.521 | 3.2 | -- | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.65 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 14 | 93.73 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 2 |
| 16 | 93.79 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 10 | 1 |
| 18 | 93.91 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 1 |
| 27 | 94.01 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 42 | 94.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 45 | 94.33 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 46 | 94.38 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 47 | 94.44 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 48 | 94.51 | humidity | 70 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 49 | 94.52 | humidity | 70 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 50 | 94.57 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 55 | 94.64 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 58 | 94.68 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 62 | 94.72 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 72 | 94.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 74 | 94.75 | humidity | 70 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 76 | 94.75 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 94 | 94.76 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 98 | 94.79 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 107 | 94.80 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 108 | 94.81 | humidity | 70 | 14400 | < th | dose independent | rect. | 9 | 12 |
| 109 | 94.81 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 110 | 94.81 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 139 | 94.83 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 140 | 94.84 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 158 | 94.85 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 22 |
| 167 | 94.87 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 20 |
| 196 | 94.89 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 206 | 94.90 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 255 | 94.94 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 259 | 94.94 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 264 | 94.95 | humidity | 70 | 14400 | < th | dose independent | sin | 21 | NA |
| 266 | 94.95 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 288 | 94.97 | humidity | 70 | 14400 | < th | dose independent | no | NA | NA |
| 333 | 94.98 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 368 | 94.99 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 373 | 95.00 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 380 | 95.00 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 382 | 95.01 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 414 | 95.03 | humidity | 70 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 418 | 95.03 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 463 | 95.05 | atmosphere | 995 | 43200 | > th | dose independent | no | NA | NA |
| 491 | 95.07 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 517 | 95.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 519 | 95.09 | humidity | 70 | 14400 | > th | dose independent | no | NA | NA |
| 520 | 95.09 | atmosphere | 995 | 43200 | < th | dose independent | no | NA | NA |
| 524 | 95.09 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 571 | 95.10 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 576 | 95.10 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 622 | 95.12 | humidity | 70 | 14400 | > th | dose independent | sin | 2 | NA |
| 653 | 95.13 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 728 | 95.17 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 737 | 95.17 | humidity | 70 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 767 | 95.19 | atmosphere | 995 | 43200 | > th | dose independent | sin | 4 | NA |
| 769 | 95.19 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 810 | 95.22 | atmosphere | 995 | 43200 | < th | dose independent | sin | 17 | NA |
| 819 | 95.23 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 822 | 95.23 | humidity | 80 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 829 | 95.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 849 | 95.26 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 855 | 95.27 | atmosphere | 995 | 43200 | > th | dose independent | sin | 17 | NA |
| 860 | 95.27 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 864 | 95.27 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 888 | 95.28 | humidity | 80 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 959 | 95.31 | radiation | 30 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 977 | 95.33 | radiation | 30 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 981 | 95.33 | humidity | 80 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 999 | 95.35 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 2 |