Os03g0673700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0673700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.94 | 0.253 | 13.5 | -0.805 | 0.595 | 0.626 | -0.346 | -0.521 | -0.00639 | 19.2 | 21.3 | 2609 | -- | -- |
| 29.33 | 0.252 | 13.4 | -0.709 | 0.599 | 0.693 | -0.354 | -- | 0.0116 | 19.4 | 21.3 | 3050 | -- | -- |
| 29.11 | 0.251 | 13.5 | -0.832 | 0.59 | 0.596 | -- | -0.664 | -0.0217 | 19.2 | 21.61 | 2562 | -- | -- |
| 29.67 | 0.254 | 13.4 | -0.7 | 0.6 | 0.691 | -- | -- | 0.012 | 19.4 | 21.3 | 3050 | -- | -- |
| 40.21 | 0.295 | 13.4 | -0.698 | -- | 0.637 | -- | -0.76 | -0.0215 | -- | 25.8 | 544 | -- | -- |
| 41.45 | 0.302 | 13.4 | -0.332 | 0.594 | -- | -0.344 | -- | 0.228 | 19.6 | -- | -- | -- | -- |
| 41.77 | 0.303 | 13.4 | -0.323 | 0.595 | -- | -- | -- | 0.228 | 19.5 | -- | -- | -- | -- |
| 40.97 | 0.298 | 13.4 | -0.511 | -- | 0.625 | -- | -- | 0.0779 | -- | 26.53 | 570 | -- | -- |
| 37.12 | 0.284 | 13.4 | -- | 0.581 | 0.398 | -- | -- | 0.0941 | 19.2 | 22.3 | 1473 | -- | -- |
| 60.68 | 0.364 | 13.4 | -0.332 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 44.53 | 0.312 | 13.4 | -- | 0.598 | -- | -- | -- | 0.264 | 19.5 | -- | -- | -- | -- |
| 47.26 | 0.32 | 13.4 | -- | -- | 0.632 | -- | -- | 0.196 | -- | 28.2 | 593 | -- | -- |
| 63.6 | 0.372 | 13.4 | -- | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 27.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 19 | 28.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 35 | 28.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 44 | 28.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 52 | 28.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 73 | 28.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 75 | 28.80 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 81 | 28.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 114 | 28.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 11 |
| 129 | 28.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 134 | 28.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 150 | 28.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 157 | 28.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 175 | 28.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 199 | 28.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 212 | 29.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 249 | 29.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 418 | 29.17 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 472 | 29.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 517 | 29.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 698 | 29.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 707 | 29.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 708 | 29.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 717 | 29.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 748 | 29.48 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 849 | 29.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 915 | 29.64 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 960 | 29.67 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 976 | 29.69 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 990 | 29.70 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |