Os03g0673600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0673600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.12 | 0.413 | 10.4 | -1.31 | 1.43 | 0.591 | 0.131 | -0.171 | -0.936 | 11.8 | 25 | 249 | -- | -- |
| 77.22 | 0.409 | 10.4 | -1.26 | 1.43 | 0.592 | 0.11 | -- | -0.93 | 11.8 | 25.1 | 249 | -- | -- |
| 77.2 | 0.409 | 10.4 | -1.3 | 1.43 | 0.596 | -- | -0.156 | -0.937 | 11.7 | 25.02 | 246 | -- | -- |
| 77.25 | 0.409 | 10.4 | -1.26 | 1.42 | 0.583 | -- | -- | -0.923 | 11.8 | 25.04 | 241 | -- | -- |
| 166.76 | 0.605 | 10.4 | -1.42 | -- | 0.942 | -- | -0.15 | -0.947 | -- | 26.6 | 65 | -- | -- |
| 93.51 | 0.453 | 10.4 | -1.09 | 1.58 | -- | 0.309 | -- | -0.639 | 12.7 | -- | -- | -- | -- |
| 93.91 | 0.454 | 10.4 | -1.08 | 1.58 | -- | -- | -- | -0.637 | 12.7 | -- | -- | -- | -- |
| 166.83 | 0.604 | 10.4 | -1.39 | -- | 0.936 | -- | -- | -0.937 | -- | 26.6 | 54 | -- | -- |
| 117.46 | 0.505 | 10.3 | -- | 1.44 | 0.42 | -- | -- | -0.712 | 12 | 25 | 254 | -- | -- |
| 250.14 | 0.739 | 10.4 | -1.14 | -- | -- | -- | -- | -0.666 | -- | -- | -- | -- | -- |
| 124.86 | 0.523 | 10.3 | -- | 1.6 | -- | -- | -- | -0.517 | 12.8 | -- | -- | -- | -- |
| 214 | 0.681 | 10.4 | -- | -- | 0.877 | -- | -- | -0.711 | -- | 26.7 | 25 | -- | -- |
| 284.45 | 0.787 | 10.4 | -- | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 3 | 69.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 7 | 70.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 14 | 70.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 132 | 73.96 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 21 |
| 177 | 74.87 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 238 | 75.94 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 18 |
| 252 | 76.02 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 20 |
| 254 | 76.02 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 273 | 76.27 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 275 | 76.29 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 4 | 17 |
| 280 | 76.33 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 2 | 19 |
| 300 | 76.49 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 22 |
| 302 | 76.51 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 321 | 76.70 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 23 |
| 356 | 77.00 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 1 | 19 |
| 360 | 77.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 361 | 77.01 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 372 | 77.12 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 375 | 77.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 410 | 77.38 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 412 | 77.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 415 | 77.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 431 | 77.50 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 433 | 77.51 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 10 | 10 |
| 449 | 77.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 458 | 77.65 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 469 | 77.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 483 | 77.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 499 | 77.88 | temperature | 20 | 10 | > th | dose dependent | sin | 22 | NA |
| 533 | 78.06 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |
| 534 | 78.06 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 547 | 78.13 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 581 | 78.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 587 | 78.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 593 | 78.29 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 616 | 78.34 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 23 |
| 623 | 78.36 | temperature | 25 | 10 | > th | dose dependent | sin | 1 | NA |
| 648 | 78.42 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 703 | 78.56 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 785 | 78.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 821 | 78.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 900 | 78.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 930 | 79.04 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 972 | 79.14 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 5 | 12 |