Os03g0672700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0672700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.54 | 0.166 | 11.5 | 0.318 | 0.228 | 0.0254 | 0.0816 | 1.27 | 0.0974 | 14 | 20.66 | 1496 | -- | -- |
| 13.83 | 0.173 | 11.6 | -0.102 | 0.243 | 0.162 | 0.0149 | -- | -0.0235 | 13.7 | 19.75 | 3730 | -- | -- |
| 12.55 | 0.165 | 11.5 | 0.32 | 0.228 | 0.0174 | -- | 1.29 | 0.101 | 14 | 20.9 | 1564 | -- | -- |
| 13.47 | 0.171 | 11.6 | -0.0543 | 0.228 | 0.163 | -- | -- | 0.0146 | 13.9 | 29.32 | 4332 | -- | -- |
| 14.88 | 0.181 | 11.6 | 0.0206 | -- | 0.249 | -- | 0.687 | -0.00363 | -- | 20.8 | 1696 | -- | -- |
| 14.42 | 0.178 | 11.6 | -0.0322 | 0.22 | -- | 0.0417 | -- | 0.0132 | 13.9 | -- | -- | -- | -- |
| 14.42 | 0.178 | 11.6 | -0.0309 | 0.22 | -- | -- | -- | 0.0135 | 13.9 | -- | -- | -- | -- |
| 15.34 | 0.183 | 11.6 | -0.0954 | -- | 0.289 | -- | -- | -0.0378 | -- | 20.8 | 1696 | -- | -- |
| 13.54 | 0.171 | 11.6 | -- | 0.235 | 0.158 | -- | -- | 0.0483 | 14 | 29.7 | 4324 | -- | -- |
| 17.35 | 0.195 | 11.6 | -0.04 | -- | -- | -- | -- | 0.00836 | -- | -- | -- | -- | -- |
| 14.45 | 0.178 | 11.6 | -- | 0.221 | -- | -- | -- | 0.0169 | 14 | -- | -- | -- | -- |
| 15.57 | 0.184 | 11.6 | -- | -- | 0.27 | -- | -- | -0.0246 | -- | 20.8 | 1696 | -- | -- |
| 17.39 | 0.195 | 11.6 | -- | -- | -- | -- | -- | 0.0128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 2 | 12.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 4 | 12.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 9 | 12.28 | temperature | 25 | 1440 | > th | dose dependent | sin | 13 | NA |
| 37 | 12.38 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 47 | 12.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 54 | 12.40 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 55 | 12.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 85 | 12.43 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 117 | 12.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 127 | 12.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 190 | 12.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 203 | 12.50 | temperature | 25 | 1440 | > th | dose independent | sin | 14 | NA |
| 204 | 12.50 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 221 | 12.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 222 | 12.50 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 242 | 12.51 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 243 | 12.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 255 | 12.52 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 264 | 12.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 271 | 12.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 288 | 12.53 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 14 |
| 291 | 12.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 390 | 12.55 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 393 | 12.55 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 525 | 12.57 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 582 | 12.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 594 | 12.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 595 | 12.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 648 | 12.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 649 | 12.59 | temperature | 25 | 1440 | < th | dose independent | sin | 14 | NA |
| 830 | 12.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 945 | 12.62 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |