Os03g0672300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate kinase isozyme A, chloroplast precursor (EC 2.7.1.40).
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Os03g0672300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate kinase isozyme A, chloroplast precursor (EC 2.7.1.40).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.9 | 0.609 | 6.97 | 0.93 | 1.1 | 2.93 | -0.305 | -1.7 | 0.455 | 1.11 | 13.27 | 383 | -- | -- |
| 169.77 | 0.607 | 6.94 | 1.21 | 1.05 | 2.87 | -0.21 | -- | 0.53 | 1.13 | 10.44 | 406 | -- | -- |
| 168.14 | 0.604 | 6.97 | 0.948 | 1.05 | 2.92 | -- | -1.62 | 0.459 | 1.14 | 12.81 | 408 | -- | -- |
| 169.95 | 0.607 | 6.94 | 1.21 | 1.05 | 2.88 | -- | -- | 0.53 | 1.15 | 10.19 | 406 | -- | -- |
| 193.07 | 0.647 | 6.97 | 0.791 | -- | 2.99 | -- | -1.57 | 0.417 | -- | 14.1 | 793 | -- | -- |
| 261.35 | 0.758 | 6.86 | 1.83 | 1.09 | -- | -0.248 | -- | 0.951 | 22.2 | -- | -- | -- | -- |
| 261.6 | 0.757 | 6.86 | 1.84 | 1.09 | -- | -- | -- | 0.951 | 22.2 | -- | -- | -- | -- |
| 195.14 | 0.651 | 6.93 | 1.08 | -- | 2.96 | -- | -- | 0.494 | -- | 13.52 | 796 | -- | -- |
| 204.67 | 0.666 | 6.96 | -- | 1.02 | 3.38 | -- | -- | 0.382 | 1.77 | 14.23 | 466 | -- | -- |
| 334.28 | 0.854 | 6.83 | 1.86 | -- | -- | -- | -- | 0.954 | -- | -- | -- | -- | -- |
| 351.07 | 0.876 | 6.91 | -- | 1.1 | -- | -- | -- | 0.746 | 22.3 | -- | -- | -- | -- |
| 222.5 | 0.695 | 6.97 | -- | -- | 3.37 | -- | -- | 0.318 | -- | 13.15 | 824 | -- | -- |
| 425.39 | 0.963 | 6.88 | -- | -- | -- | -- | -- | 0.747 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 3 | 165.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 7 | 165.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 19 |
| 23 | 166.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 25 | 166.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 28 | 166.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 57 | 167.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 89 | 168.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 90 | 168.09 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 173 | 169.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 204 | 169.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 227 | 169.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 240 | 169.82 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 269 | 169.98 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 293 | 170.20 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 302 | 170.29 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 316 | 170.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 320 | 170.42 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 909 | 174.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 958 | 174.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 2 |