Os03g0670100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP-binding protein of ABC transporter.
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Os03g0670100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP-binding protein of ABC transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.65 | 0.238 | 12.6 | -1.18 | 0.513 | 0.584 | -0.17 | -1.57 | -0.318 | 15.2 | 15.3 | 1306 | -- | -- |
| 27.49 | 0.244 | 12.5 | -0.823 | 0.476 | 0.595 | -0.0609 | -- | -0.233 | 14.6 | 12.29 | 842 | -- | -- |
| 25.73 | 0.236 | 12.6 | -1.18 | 0.507 | 0.568 | -- | -1.52 | -0.319 | 15.3 | 15.5 | 1360 | -- | -- |
| 27.31 | 0.243 | 12.5 | -0.83 | 0.482 | 0.678 | -- | -- | -0.227 | 14.2 | 12.37 | 780 | -- | -- |
| 30.94 | 0.26 | 12.6 | -1.05 | -- | 0.93 | -- | -1.39 | -0.316 | -- | 15.5 | 1360 | -- | -- |
| 33.28 | 0.27 | 12.5 | -0.654 | 0.468 | -- | -0.0435 | -- | -0.121 | 15.3 | -- | -- | -- | -- |
| 33.29 | 0.27 | 12.5 | -0.654 | 0.468 | -- | -- | -- | -0.122 | 15.4 | -- | -- | -- | -- |
| 32.48 | 0.265 | 12.5 | -0.856 | -- | 0.951 | -- | -- | -0.256 | -- | 14.21 | 19 | -- | -- |
| 43.27 | 0.306 | 12.5 | -- | 0.464 | 0.304 | -- | -- | -0.0929 | 14.7 | 15.06 | 677 | -- | -- |
| 45.61 | 0.316 | 12.5 | -0.674 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 44.57 | 0.312 | 12.5 | -- | 0.481 | -- | -- | -- | -0.0488 | 15.4 | -- | -- | -- | -- |
| 47.66 | 0.323 | 12.5 | -- | -- | 0.64 | -- | -- | -0.107 | -- | 24.53 | 9 | -- | -- |
| 57.6 | 0.354 | 12.5 | -- | -- | -- | -- | -- | -0.0592 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 2 | 21.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 4 | 21.29 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 14 | 21.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 20 | 21.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 23 | 21.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 24 | 21.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 25 | 21.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 26 | 21.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 28 | 21.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 119 | 22.26 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 252 | 22.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 358 | 23.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 15 |
| 376 | 23.30 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 388 | 23.36 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 439 | 23.59 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 475 | 23.69 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 501 | 23.78 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 632 | 24.16 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 11 |
| 667 | 24.24 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 8 |
| 678 | 24.26 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 6 |
| 769 | 24.50 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 821 | 24.64 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 873 | 24.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 940 | 24.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 961 | 24.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 984 | 24.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |