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Os03g0670000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1713, mitochondria domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0157) R2 : 0.358
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.636 (0.0403) R2dC : 0.351 R2C : 0.352
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0619 (0.0331) R2dN8 : 0.00635 R2N8 : 0.00681
σ : 0.297
deviance : 40.27
__
_____
C
peak time of C : 16.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.97 0.235 11.5 0.663 0.549 -0.399 0.46 -0.216 -0.0133 18.5 25.93 34 -- --
25.15 0.234 11.5 0.667 0.547 -0.374 0.42 -- -0.0132 18.3 25.93 35 -- --
25.46 0.235 11.5 0.658 0.552 -0.386 -- -0.168 -0.0105 18.4 25.58 35 -- --
25.52 0.235 11.5 0.653 0.544 -0.398 -- -- -0.0114 18.4 25.56 46 -- --
28.13 0.247 11.4 0.651 -- -0.635 -- -0.543 -0.0324 -- 0.3739 534 -- --
27.75 0.247 11.4 0.672 0.647 -- 0.407 -- 0.0112 16.1 -- -- -- --
28.21 0.249 11.4 0.676 0.649 -- -- -- 0.0134 16.1 -- -- -- --
28.65 0.249 11.4 0.616 -- -0.639 -- -- -0.011 -- 0.3505 524 -- --
37 0.283 11.5 -- 0.523 -0.437 -- -- -0.0869 18.7 26.25 59 -- --
51.12 0.334 11.4 0.65 -- -- -- -- -0.00386 -- -- -- -- --
40.27 0.297 11.5 -- 0.636 -- -- -- -0.0619 16.1 -- -- -- --
38.68 0.29 11.4 -- -- -0.676 -- -- -0.0311 -- 3.517e-06 517 -- --
62.27 0.368 11.5 -- -- -- -- -- -0.076 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.19 atmosphere 1005.0 270 > th dose independent rect. 24 6
2 23.21 radiation 40.0 90 < th dose dependent rect. 3 16
9 23.33 humidity 60.0 10 > th dose dependent rect. 2 18
14 23.39 radiation 40.0 10 < th dose dependent rect. 4 16
16 23.41 radiation 20.0 14400 < th dose dependent rect. 21 6
28 23.46 humidity 60.0 10 > th dose dependent rect. 4 16
31 23.48 wind 5.0 270 < th dose independent rect. 24 7
38 23.53 wind 5.0 270 < th dose independent rect. 1 5
39 23.55 radiation 40.0 90 < th dose independent rect. 3 17
43 23.56 wind 7.0 90 < th dose dependent rect. 2 7
46 23.57 radiation 20.0 30 < th dose independent rect. 2 18
48 23.60 radiation 40.0 270 < th dose independent rect. 13 16
58 23.64 wind 5.0 270 < th dose independent rect. 2 3
65 23.65 wind 7.0 10 < th dose dependent rect. 2 7
76 23.68 temperature 10.0 10 > th dose dependent rect. 8 18
80 23.70 radiation 20.0 10 < th dose independent rect. 4 16
81 23.70 atmosphere 995.0 270 > th dose independent rect. 1 18
95 23.73 precipitation 0.1 90 < th dose independent rect. 8 18
97 23.73 precipitation 0.1 90 < th dose dependent rect. 8 18
100 23.74 temperature 30.0 270 < th dose independent rect. 1 17
105 23.74 radiation 40.0 270 < th dose dependent rect. 24 9
114 23.75 radiation 40.0 30 < th dose dependent rect. 2 21
125 23.77 radiation 40.0 90 < th dose dependent rect. 2 8
127 23.78 temperature 10.0 270 > th dose independent rect. 19 6
128 23.78 temperature 30.0 270 < th dose independent rect. 19 6
129 23.78 humidity 50.0 270 > th dose independent rect. 19 6
131 23.78 atmosphere 995.0 270 > th dose independent rect. 19 6
132 23.78 radiation 1.0 270 < th dose independent rect. 19 6
138 23.78 temperature 10.0 270 > th dose independent rect. 1 18
140 23.78 atmosphere 1015.0 270 < th dose independent rect. 1 18
141 23.78 radiation 1.0 270 < th dose dependent rect. 19 6
150 23.79 wind 9.0 270 < th dose independent rect. 19 6
153 23.79 precipitation 0.1 270 < th dose independent rect. 5 9
157 23.79 precipitation 0.1 270 < th dose dependent rect. 5 9
167 23.80 wind 9.0 270 < th dose dependent rect. 24 7
176 23.81 radiation 30.0 90 < th dose independent rect. 2 7
179 23.81 precipitation 0.1 270 < th dose independent rect. 6 19
180 23.81 wind 7.0 270 < th dose dependent rect. 2 3
186 23.81 precipitation 0.1 270 < th dose dependent rect. 6 19
187 23.81 radiation 40.0 90 < th dose dependent rect. 13 20
189 23.82 wind 9.0 270 < th dose independent rect. 1 18
205 23.84 precipitation 0.1 270 < th dose independent rect. 1 5
206 23.84 precipitation 0.1 270 < th dose independent rect. 19 6
209 23.84 radiation 20.0 30 < th dose independent rect. 2 21
210 23.84 precipitation 0.1 270 < th dose dependent rect. 1 5
211 23.84 precipitation 0.1 270 < th dose dependent rect. 19 6
217 23.85 radiation 20.0 270 < th dose independent rect. 24 8
218 23.85 temperature 10.0 270 > th dose independent rect. 5 9
219 23.85 atmosphere 995.0 270 > th dose independent rect. 5 9
220 23.85 atmosphere 1015.0 270 < th dose independent rect. 5 9
221 23.85 temperature 10.0 270 > th dose independent rect. 14 15
224 23.85 atmosphere 995.0 90 > th dose dependent rect. 2 6
233 23.86 radiation 40.0 10 < th dose independent rect. 2 8
234 23.86 wind 9.0 270 < th dose independent rect. 5 9
241 23.86 atmosphere 1000.0 270 > th dose dependent rect. 24 6
253 23.87 humidity 50.0 30 > th dose dependent rect. 20 6
258 23.88 precipitation 0.1 270 < th dose independent rect. 24 7
260 23.88 wind 9.0 270 < th dose independent rect. 14 15
262 23.88 precipitation 0.1 270 < th dose independent rect. 5 21
267 23.88 precipitation 0.1 270 < th dose dependent rect. 24 7
275 23.88 precipitation 0.1 270 < th dose dependent rect. 5 21
276 23.89 precipitation 0.1 270 < th dose independent rect. 2 3
281 23.89 precipitation 0.1 270 < th dose dependent rect. 2 3
293 23.90 radiation 10.0 270 < th dose independent rect. 1 6
319 23.92 precipitation 0.1 10 < th dose independent rect. 2 7
324 23.92 precipitation 0.1 10 < th dose dependent rect. 2 7
333 23.93 temperature 10.0 270 > th dose independent rect. 1 5
335 23.93 temperature 30.0 270 < th dose independent rect. 1 5
336 23.93 humidity 50.0 270 > th dose independent rect. 1 5
339 23.93 atmosphere 995.0 270 > th dose independent rect. 1 5
341 23.93 atmosphere 1015.0 270 < th dose independent rect. 1 5
347 23.93 precipitation 0.1 270 < th dose independent rect. 1 18
348 23.93 wind 9.0 270 < th dose independent rect. 6 19
349 23.93 temperature 10.0 270 > th dose independent rect. 6 19
351 23.93 temperature 10.0 270 > th dose dependent rect. 1 5
360 23.93 precipitation 0.1 270 < th dose dependent rect. 1 18
365 23.94 precipitation 0.1 90 < th dose independent rect. 19 8
366 23.94 atmosphere 995.0 270 > th dose independent rect. 14 15
373 23.94 precipitation 0.1 90 < th dose dependent rect. 19 8
383 23.95 temperature 30.0 90 < th dose independent rect. 2 7
385 23.95 atmosphere 1010.0 90 < th dose independent rect. 2 7
414 23.96 temperature 10.0 270 > th dose independent rect. 24 7
416 23.96 temperature 30.0 270 < th dose independent rect. 24 7
417 23.96 humidity 50.0 270 > th dose independent rect. 24 7
419 23.96 atmosphere 995.0 270 > th dose independent rect. 24 7
420 23.96 atmosphere 1010.0 270 < th dose independent rect. 24 7
427 23.96 radiation 40.0 270 < th dose independent rect. 11 8
430 23.96 temperature 10.0 270 > th dose independent rect. 7 17
438 23.96 temperature 10.0 270 > th dose dependent rect. 6 7
453 23.97 wind 9.0 270 < th dose independent rect. 7 17
454 23.97 humidity 70.0 90 > th dose independent rect. 2 18
457 23.97 atmosphere 995.0 270 > th dose dependent rect. 2 3
462 23.97 radiation 20.0 270 < th dose dependent rect. 1 13
467 23.98 humidity 60.0 90 > th dose independent rect. 2 7
470 23.98 wind 9.0 90 < th dose independent rect. 9 17
479 23.98 radiation 40.0 10 < th dose dependent rect. 4 19
482 23.99 temperature 10.0 270 > th dose independent rect. 2 3
484 23.99 temperature 30.0 270 < th dose independent rect. 2 3
485 23.99 humidity 50.0 270 > th dose independent rect. 2 3
488 23.99 atmosphere 995.0 270 > th dose independent rect. 2 3
489 23.99 atmosphere 1010.0 270 < th dose independent rect. 2 3
491 23.99 radiation 20.0 270 < th dose independent rect. 2 3
504 23.99 temperature 10.0 270 > th dose independent rect. 5 21
505 23.99 radiation 1.0 270 < th dose dependent rect. 2 3
506 23.99 radiation 20.0 270 < th dose dependent rect. 2 3
519 24.00 radiation 1.0 270 < th dose independent rect. 2 3
541 24.00 temperature 10.0 90 > th dose independent rect. 9 17
544 24.00 wind 9.0 270 < th dose independent rect. 5 21
578 24.01 temperature 10.0 270 > th dose dependent rect. 24 7
630 24.03 temperature 10.0 10 > th dose independent rect. 2 7
634 24.03 temperature 10.0 1440 > th dose independent rect. 3 7
637 24.03 temperature 30.0 10 < th dose independent rect. 2 7
639 24.03 humidity 50.0 10 > th dose independent rect. 2 7
643 24.03 atmosphere 995.0 10 > th dose independent rect. 2 7
645 24.03 atmosphere 995.0 1440 > th dose independent rect. 3 7
646 24.03 atmosphere 1015.0 10 < th dose independent rect. 2 7
651 24.03 temperature 10.0 10 > th dose independent rect. 9 17
653 24.03 temperature 10.0 1440 > th dose independent rect. 10 17
661 24.03 temperature 30.0 10 < th dose dependent rect. 4 16
665 24.04 wind 9.0 1440 < th dose independent rect. 3 6
675 24.04 humidity 50.0 1440 > th dose independent rect. 3 6
696 24.04 humidity 50.0 270 > th dose independent rect. 20 15
700 24.04 wind 9.0 10 < th dose independent rect. 9 17
707 24.04 temperature 10.0 270 > th dose dependent rect. 2 3
729 24.05 temperature 10.0 1440 > th dose independent rect. 21 6
733 24.05 temperature 30.0 1440 < th dose independent rect. 21 6
739 24.05 humidity 50.0 1440 > th dose independent rect. 21 6
747 24.05 atmosphere 995.0 1440 > th dose independent rect. 21 6
750 24.05 radiation 1.0 1440 < th dose independent rect. 21 6
777 24.05 wind 1.0 270 > th dose independent rect. 11 9
778 24.05 temperature 10.0 270 > th dose independent rect. 11 9
779 24.05 atmosphere 1015.0 270 < th dose independent rect. 11 9
780 24.05 temperature 10.0 270 > th dose independent rect. 20 15
781 24.05 atmosphere 995.0 270 > th dose independent rect. 20 15
785 24.05 temperature 10.0 1440 > th dose independent rect. 3 18
811 24.06 radiation 40.0 30 < th dose independent rect. 2 21
826 24.07 wind 1.0 270 > th dose independent rect. 2 2
848 24.07 wind 9.0 10 < th dose independent rect. 20 8
851 24.07 temperature 10.0 10 > th dose independent rect. 20 8
854 24.07 temperature 30.0 10 < th dose independent rect. 20 8
857 24.07 humidity 50.0 10 > th dose independent rect. 20 8
862 24.07 atmosphere 995.0 10 > th dose independent rect. 20 8
868 24.07 radiation 1.0 10 < th dose independent rect. 20 8
873 24.07 wind 9.0 270 < th dose independent rect. 20 15
875 24.07 temperature 10.0 10 > th dose independent rect. 4 16
879 24.07 atmosphere 1015.0 10 < th dose independent rect. 4 16
897 24.07 radiation 1.0 10 < th dose dependent rect. 20 8
913 24.08 atmosphere 995.0 270 > th dose independent rect. 11 9
940 24.09 humidity 50.0 270 > th dose dependent rect. 2 3
968 24.10 radiation 20.0 10 < th dose independent rect. 4 19
995 24.11 wind 9.0 10 < th dose independent rect. 4 16
996 24.11 atmosphere 995.0 10 > th dose independent rect. 4 16