Os03g0669300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 17 protein.
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Os03g0669300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.62 | 0.533 | 9.94 | -2.91 | 0.762 | -0.464 | -0.329 | 0.179 | -0.253 | 0.636 | 20.6 | 74 | -- | -- |
| 128.54 | 0.532 | 9.94 | -2.86 | 0.766 | -0.468 | -0.215 | -- | -0.242 | 0.579 | 20.7 | 57 | -- | -- |
| 128.73 | 0.532 | 9.94 | -2.86 | 0.766 | -0.469 | -- | 0.0455 | -0.243 | 0.607 | 20.65 | 68 | -- | -- |
| 128.74 | 0.532 | 9.93 | -2.85 | 0.767 | -0.471 | -- | -- | -0.241 | 0.609 | 20.7 | 57 | -- | -- |
| 161.08 | 0.591 | 9.93 | -2.93 | -- | -0.295 | -- | 0.498 | -0.226 | -- | 19.8 | 614 | -- | -- |
| 138.14 | 0.551 | 9.91 | -2.75 | 0.649 | -- | -0.28 | -- | -0.15 | 0.479 | -- | -- | -- | -- |
| 138.48 | 0.551 | 9.91 | -2.74 | 0.65 | -- | -- | -- | -0.148 | 0.526 | -- | -- | -- | -- |
| 156.19 | 0.585 | 9.87 | -2.66 | -- | 0.304 | -- | -- | 0.0108 | -- | 25.14 | 822 | -- | -- |
| 309.86 | 0.82 | 9.85 | -- | 0.351 | 0.648 | -- | -- | 0.157 | 22.2 | 27.8 | 2 | -- | -- |
| 164.96 | 0.6 | 9.9 | -2.71 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 335.8 | 0.857 | 9.84 | -- | 0.61 | -- | -- | -- | 0.156 | 0.304 | -- | -- | -- | -- |
| 218.91 | 0.689 | 9.73 | -- | -- | 1.86 | -- | -- | 0.617 | -- | 18.53 | 47520 | -- | -- |
| 359.21 | 0.885 | 9.83 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 6 | 126.97 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 1 |
| 7 | 127.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 8 | 127.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 20 | 127.54 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 4 |
| 37 | 128.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 43 | 128.16 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 50 | 128.21 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 64 | 128.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 86 | 128.53 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 96 | 128.63 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 21 |
| 97 | 128.63 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 23 |
| 117 | 128.78 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 23 |
| 120 | 128.79 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 121 | 128.79 | temperature | 25 | 90 | < th | dose dependent | sin | 11 | NA |
| 131 | 128.85 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 17 |
| 154 | 128.95 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 159 | 128.96 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 177 | 129.04 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 14 |
| 197 | 129.08 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 23 |
| 205 | 129.09 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 15 |
| 209 | 129.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 214 | 129.12 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 18 | 2 |
| 220 | 129.14 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 224 | 129.15 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 226 | 129.16 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 21 |
| 231 | 129.18 | temperature | 20 | 30 | > th | dose independent | sin | 9 | NA |
| 234 | 129.18 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 240 | 129.21 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 6 |
| 276 | 129.30 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 284 | 129.31 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 289 | 129.32 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 291 | 129.32 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 23 |
| 309 | 129.36 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 310 | 129.36 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 340 | 129.40 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 346 | 129.42 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 352 | 129.43 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 367 | 129.45 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 15 |
| 371 | 129.46 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 373 | 129.46 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 16 | 8 |
| 377 | 129.48 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 394 | 129.51 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 412 | 129.53 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 23 |
| 433 | 129.56 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 446 | 129.59 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 461 | 129.60 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 465 | 129.61 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 468 | 129.61 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 23 |
| 476 | 129.62 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 500 | 129.66 | temperature | 20 | 90 | < th | dose independent | sin | 10 | NA |
| 502 | 129.66 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 506 | 129.66 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 529 | 129.71 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 534 | 129.72 | wind | 5 | 720 | < th | dose independent | rect. | 14 | 3 |
| 593 | 129.79 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 597 | 129.79 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 610 | 129.80 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 639 | 129.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 643 | 129.87 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 676 | 129.89 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 700 | 129.91 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 10 |
| 721 | 129.92 | wind | 7 | 720 | < th | dose independent | rect. | 23 | 18 |
| 729 | 129.92 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 747 | 129.94 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 756 | 129.94 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 791 | 129.99 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 882 | 130.07 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 910 | 130.09 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 11 |
| 913 | 130.10 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 914 | 130.10 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 935 | 130.11 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 936 | 130.11 | radiation | 30 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 953 | 130.12 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 984 | 130.15 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 14 |