Os03g0668300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0668300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.45 | 0.464 | 9.68 | 0.808 | 1.94 | -0.956 | -0.567 | 4.23 | 0.346 | 22.2 | 26.05 | 921 | -- | -- |
| 99.9 | 0.466 | 9.77 | 0.0712 | 1.86 | -0.486 | -0.488 | -- | 0.224 | 22.4 | 26.16 | 1277 | -- | -- |
| 98.58 | 0.462 | 9.69 | 0.74 | 1.93 | -0.862 | -- | 3.42 | 0.336 | 22.3 | 26.1 | 987 | -- | -- |
| 99.89 | 0.465 | 9.77 | 0.0927 | 1.83 | -0.445 | -- | -- | 0.186 | 22.4 | 26.3 | 1290 | -- | -- |
| 272.35 | 0.773 | 9.67 | 0.517 | -- | -1.26 | -- | 4.57 | 0.298 | -- | 26.1 | 987 | -- | -- |
| 108.38 | 0.488 | 9.78 | -0.0755 | 1.76 | -- | -0.408 | -- | 0.162 | 22.3 | -- | -- | -- | -- |
| 109.05 | 0.489 | 9.78 | -0.0592 | 1.76 | -- | -- | -- | 0.163 | 22.3 | -- | -- | -- | -- |
| 273.04 | 0.773 | 9.71 | 0.112 | -- | -0.976 | -- | -- | 0.276 | -- | 24.1 | 725 | -- | -- |
| 99.82 | 0.465 | 9.79 | -- | 1.8 | -0.442 | -- | -- | 0.107 | 22.4 | 28.5 | 1275 | -- | -- |
| 297.38 | 0.806 | 9.73 | -0.0317 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 109.14 | 0.489 | 9.78 | -- | 1.76 | -- | -- | -- | 0.17 | 22.3 | -- | -- | -- | -- |
| 261.26 | 0.755 | 9.69 | -- | -- | -1.53 | -- | -- | 0.346 | -- | 10.02 | 735 | -- | -- |
| 297.4 | 0.805 | 9.73 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 18 |
| 5 | 93.81 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 18 | 94.51 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 20 | 94.62 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 23 | 94.75 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 31 | 95.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 37 | 95.18 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 39 | 95.23 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 42 | 95.30 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 55 | 95.35 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 56 | 95.35 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 61 | 95.39 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 63 | 95.40 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 64 | 95.40 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 68 | 95.42 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 71 | 95.46 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 74 | 95.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 78 | 95.51 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 84 | 95.54 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 93 | 95.55 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 107 | 95.69 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 112 | 95.76 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 134 | 95.84 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 142 | 95.96 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 160 | 96.02 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 170 | 96.03 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 179 | 96.08 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 185 | 96.11 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 186 | 96.11 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 15 |
| 187 | 96.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 188 | 96.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 189 | 96.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 200 | 96.14 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 201 | 96.14 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 222 | 96.17 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 225 | 96.18 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 10 |
| 245 | 96.24 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 259 | 96.28 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 10 |
| 263 | 96.29 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 298 | 96.36 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 302 | 96.36 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 16 |
| 321 | 96.40 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 330 | 96.42 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 333 | 96.42 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 336 | 96.42 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 339 | 96.43 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 347 | 96.43 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 354 | 96.44 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 363 | 96.45 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 411 | 96.49 | wind | 7 | 43200 | > th | dose independent | sin | 21 | NA |
| 420 | 96.49 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 427 | 96.51 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 434 | 96.52 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 442 | 96.53 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 20 |
| 486 | 96.57 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 531 | 96.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 18 |
| 547 | 96.62 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 20 |
| 554 | 96.63 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 596 | 96.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 676 | 96.73 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 12 |
| 680 | 96.74 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 734 | 96.78 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 13 |
| 761 | 96.79 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 10 |
| 794 | 96.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 818 | 96.85 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 825 | 96.85 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 876 | 96.87 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 880 | 96.88 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 10 |
| 901 | 96.90 | radiation | 10 | 1440 | < th | dose independent | sin | 11 | NA |
| 911 | 96.90 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 912 | 96.90 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 914 | 96.90 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 949 | 96.92 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 977 | 96.94 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |