Os03g0666100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Guanine nucleotide-exchange protein GEP1.
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Os03g0666100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Guanine nucleotide-exchange protein GEP1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.15 | 0.183 | 11.2 | 1.28 | 0.446 | -0.341 | -0.35 | 1.83 | 0.325 | 2.43 | 24.22 | 1288 | -- | -- |
| 16.45 | 0.19 | 11.3 | 0.776 | 0.313 | -0.26 | -0.345 | -- | 0.202 | 2.43 | 23.55 | 8496 | -- | -- |
| 15.47 | 0.183 | 11.2 | 1.3 | 0.402 | -0.334 | -- | 1.85 | 0.328 | 2.3 | 24.11 | 1694 | -- | -- |
| 16.73 | 0.192 | 11.3 | 0.79 | 0.318 | -0.256 | -- | -- | 0.21 | 2.55 | 21.91 | 7969 | -- | -- |
| 19.83 | 0.209 | 11.3 | 1.01 | -- | -0.629 | -- | 1.36 | 0.288 | -- | 24.11 | 1694 | -- | -- |
| 17.5 | 0.196 | 11.3 | 0.732 | 0.417 | -- | -0.273 | -- | 0.167 | 2.52 | -- | -- | -- | -- |
| 17.77 | 0.197 | 11.3 | 0.739 | 0.416 | -- | -- | -- | 0.169 | 2.55 | -- | -- | -- | -- |
| 20.55 | 0.212 | 11.3 | 0.858 | -- | -0.547 | -- | -- | 0.263 | -- | 21.91 | 7969 | -- | -- |
| 23.3 | 0.225 | 11.4 | -- | 0.414 | 0.461 | -- | -- | -0.0638 | 2.55 | 16.3 | 47520 | -- | -- |
| 27.95 | 0.247 | 11.3 | 0.757 | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
| 32.16 | 0.265 | 11.3 | -- | 0.431 | -- | -- | -- | 0.0865 | 2.57 | -- | -- | -- | -- |
| 33.12 | 0.268 | 11.4 | -- | -- | 0.483 | -- | -- | -0.0645 | -- | 16.7 | 47520 | -- | -- |
| 43.05 | 0.306 | 11.3 | -- | -- | -- | -- | -- | 0.0953 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 13 | 14.94 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 78 | 15.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 97 | 15.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 153 | 15.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 154 | 15.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 160 | 15.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 166 | 15.18 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 174 | 15.19 | temperature | 25 | 1440 | > th | dose independent | sin | 16 | NA |
| 192 | 15.20 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 202 | 15.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 240 | 15.22 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 259 | 15.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 280 | 15.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 287 | 15.24 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 337 | 15.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 584 | 15.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 686 | 15.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 748 | 15.47 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 21 |
| 869 | 15.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 925 | 15.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 991 | 15.54 | temperature | 20 | 90 | > th | dose dependent | sin | 17 | NA |