Os03g0664400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Expressed protein (With alternative splicing).
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Os03g0664400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Expressed protein (With alternative splicing).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 361.72 | 0.894 | 3.13 | 0.0108 | 0.0618 | -0.672 | 1.47 | 7.09 | -0.00535 | 16.4 | 0.8 | 12 | -- | -- |
| 373.39 | 0.9 | 3.14 | -0.02 | 0.137 | 0.493 | 1.22 | -- | 0.0213 | 17.2 | 0.9002 | 8 | -- | -- |
| 367.35 | 0.893 | 3.13 | 0.0258 | 0.0825 | -0.664 | -- | 6.48 | 0.00171 | 18 | 0.7111 | 12 | -- | -- |
| 376.55 | 0.904 | 3.14 | -0.0248 | 0.143 | 0.546 | -- | -- | 0.0242 | 18.4 | 0.09973 | 8 | -- | -- |
| 367.68 | 0.893 | 3.13 | 0.0256 | -- | -0.707 | -- | 6.46 | -0.00205 | -- | 0.7929 | 12 | -- | -- |
| 374.96 | 0.908 | 3.15 | 0.00657 | 0.0996 | -- | 1.17 | -- | 0.00819 | 17.4 | -- | -- | -- | -- |
| 378.15 | 0.911 | 3.15 | 0.00278 | 0.124 | -- | -- | -- | 0.0129 | 19.2 | -- | -- | -- | -- |
| 377.59 | 0.905 | 3.14 | -0.0261 | -- | 0.494 | -- | -- | 0.0201 | -- | 0.06947 | 8 | -- | -- |
| 376.57 | 0.904 | 3.14 | -- | 0.143 | 0.539 | -- | -- | 0.0269 | 18.4 | 0.09035 | 8 | -- | -- |
| 378.96 | 0.91 | 3.14 | 0.000591 | -- | -- | -- | -- | 0.0108 | -- | -- | -- | -- | -- |
| 378.15 | 0.91 | 3.15 | -- | 0.124 | -- | -- | -- | 0.0126 | 19.3 | -- | -- | -- | -- |
| 377.61 | 0.905 | 3.14 | -- | -- | 0.488 | -- | -- | 0.0228 | -- | 0.07448 | 8 | -- | -- |
| 378.96 | 0.909 | 3.14 | -- | -- | -- | -- | -- | 0.0108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 354.81 | wind | 3 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 2 | 355.13 | wind | 3 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 3 | 357.34 | wind | 3 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 4 | 357.35 | wind | 5 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 5 | 357.40 | wind | 3 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 8 | 357.50 | wind | 3 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 12 | 357.64 | wind | 3 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 15 | 357.69 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 3 |
| 17 | 357.71 | wind | 1 | 30 | < th | dose dependent | rect. | 9 | 16 |
| 18 | 357.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 23 | 357.78 | wind | 3 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 29 | 357.91 | wind | 3 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 30 | 357.93 | wind | 3 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 43 | 358.17 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 50 | 358.26 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 1 |
| 53 | 358.27 | wind | 1 | 30 | < th | dose dependent | rect. | 13 | 12 |
| 59 | 358.38 | wind | 1 | 10 | < th | dose dependent | rect. | 4 | 21 |
| 61 | 358.41 | wind | 3 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 62 | 358.41 | wind | 1 | 30 | < th | dose dependent | rect. | 21 | 3 |
| 69 | 358.48 | wind | 1 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 92 | 358.69 | wind | 5 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 122 | 358.94 | wind | 1 | 10 | < th | dose independent | rect. | 21 | 3 |
| 140 | 359.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 143 | 359.07 | humidity | 90 | 10 | > th | dose dependent | rect. | 24 | 3 |
| 145 | 359.09 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 3 |
| 146 | 359.09 | wind | 1 | 90 | < th | dose independent | rect. | 13 | 11 |
| 153 | 359.13 | wind | 1 | 10 | < th | dose independent | rect. | 12 | 12 |
| 175 | 359.28 | wind | 1 | 10 | < th | dose independent | rect. | 4 | 21 |
| 176 | 359.28 | wind | 1 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 187 | 359.33 | wind | 1 | 90 | < th | dose independent | rect. | 21 | 3 |
| 211 | 359.43 | wind | 1 | 90 | < th | dose independent | rect. | 16 | 8 |
| 244 | 359.49 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 19 |
| 262 | 359.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 277 | 359.67 | wind | 1 | 10 | < th | dose dependent | sin | 19 | NA |
| 281 | 359.69 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 300 | 359.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 309 | 359.82 | wind | 1 | 30 | < th | dose dependent | sin | 17 | NA |
| 310 | 359.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 319 | 359.88 | wind | 1 | 30 | < th | dose independent | rect. | 7 | 1 |
| 326 | 359.91 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 24 | 6 |
| 334 | 359.96 | wind | 3 | 1440 | > th | dose independent | sin | 22 | NA |
| 357 | 360.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 370 | 360.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 372 | 360.10 | wind | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 374 | 360.10 | wind | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 385 | 360.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 394 | 360.21 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 12 | 2 |
| 414 | 360.28 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 5 |
| 420 | 360.32 | wind | 3 | 1440 | < th | dose independent | sin | 22 | NA |
| 429 | 360.33 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 465 | 360.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 474 | 360.53 | wind | 5 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 479 | 360.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 18 |
| 484 | 360.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 509 | 360.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 529 | 360.75 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 569 | 360.99 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 4 |
| 590 | 361.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 603 | 361.12 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 610 | 361.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 611 | 361.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 645 | 361.24 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 681 | 361.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 759 | 361.58 | wind | 1 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 854 | 361.77 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 862 | 361.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 868 | 361.80 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 889 | 361.83 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 915 | 361.87 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 933 | 361.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 950 | 361.92 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 967 | 361.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 980 | 361.96 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 984 | 361.97 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 985 | 361.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 994 | 361.98 | radiation | 40 | 10 | > th | dose dependent | rect. | 14 | 1 |