Os03g0663100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os03g0663100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 339.09 | 0.865 | 4.6 | 4.65 | 0.431 | 0.816 | 1.73 | 6.06 | 2.2 | 22.1 | 20.54 | 4171 | -- | -- |
| 358.31 | 0.882 | 4.76 | 3.11 | 0.389 | 1 | 1.73 | -- | 2.1 | 21.6 | 29.46 | 2633 | -- | -- |
| 347.55 | 0.868 | 4.59 | 4.68 | 0.394 | 0.8 | -- | 6.41 | 2.22 | 23.1 | 20.6 | 3788 | -- | -- |
| 369.33 | 0.895 | 4.77 | 3.01 | 0.384 | 1.19 | -- | -- | 2 | 0.262 | 27.4 | 3718 | -- | -- |
| 356.51 | 0.879 | 4.59 | 4.65 | -- | 0.897 | -- | 6.45 | 2.2 | -- | 20.6 | 3791 | -- | -- |
| 398.04 | 0.935 | 4.79 | 3.38 | 0.501 | -- | 1.82 | -- | 1.94 | 22.8 | -- | -- | -- | -- |
| 411.46 | 0.95 | 4.79 | 3.3 | 0.496 | -- | -- | -- | 1.93 | 23.5 | -- | -- | -- | -- |
| 377.23 | 0.905 | 4.77 | 2.96 | -- | 1.28 | -- | -- | 1.97 | -- | 26.94 | 3761 | -- | -- |
| 543.2 | 1.09 | 4.97 | -- | 0.258 | 2.44 | -- | -- | 1.07 | 21.7 | 15.58 | 5569 | -- | -- |
| 426.87 | 0.965 | 4.78 | 3.32 | -- | -- | -- | -- | 1.93 | -- | -- | -- | -- | -- |
| 699.01 | 1.24 | 4.88 | -- | 0.534 | -- | -- | -- | 1.56 | 23.9 | -- | -- | -- | -- |
| 384.12 | 0.913 | 5.09 | -- | -- | 2.69 | -- | -- | 0.572 | -- | 20.5 | 47520 | -- | -- |
| 716.99 | 1.25 | 4.87 | -- | -- | -- | -- | -- | 1.57 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 331.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 2 | 331.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 3 | 331.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 4 | 331.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 6 | 331.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 7 | 331.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 8 | 331.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 9 | 332.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 10 | 332.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 11 | 332.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 23 | 332.61 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 24 | 332.64 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 25 | 332.68 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 33 | 333.27 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 43 | 333.47 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 57 | 333.65 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 67 | 333.75 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 68 | 333.75 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 80 | 333.84 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 110 | 333.93 | temperature | 25.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 115 | 333.95 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 119 | 333.97 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 11 |
| 136 | 334.04 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 143 | 334.10 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 162 | 334.16 | temperature | 25.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 170 | 334.17 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 194 | 334.23 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 199 | 334.24 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 216 | 334.28 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 223 | 334.29 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 17 | 16 |
| 289 | 334.40 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 305 | 334.44 | radiation | 10.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 314 | 334.45 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 317 | 334.45 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 381 | 334.60 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 417 | 334.64 | temperature | 20.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 469 | 334.71 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 494 | 334.74 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 496 | 334.74 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 499 | 334.75 | temperature | 25.0 | 43200 | < th | dose independent | no | NA | NA |
| 684 | 334.92 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 722 | 334.97 | temperature | 25.0 | 43200 | > th | dose independent | no | NA | NA |
| 765 | 335.02 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 824 | 335.10 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 829 | 335.10 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 2 | 11 |