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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0661900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase, trypsin-like serine and cysteine domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.76 (0.0291) R2 : 0.529
β1 : 1.83 (0.107) R2dD : 0.317 R2D : 0.209
β2 : 1.02 (0.075) R2dC : 0.192 R2C : 0.141
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.63 (0.0622) R2dN8 : 0.142 R2N8 : 0.0309
σ : 0.548
deviance : 136.72
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_____
C
peak time of C : 16.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.44 0.528 4.8 1.59 1.02 -0.472 -0.113 1.5 0.457 16.6 15 1438 -- --
130.51 0.532 4.77 1.78 0.934 -0.526 -0.158 -- 0.54 16.9 18.29 1676 -- --
126.47 0.524 4.8 1.59 1.02 -0.475 -- 1.5 0.457 16.6 14.8 1440 -- --
130.14 0.531 4.78 1.81 0.788 -0.647 -- -- 0.528 17.1 15.32 1791 -- --
134.63 0.54 4.74 1.75 -- -1.25 -- 1.1 0.521 -- 13.51 595 -- --
136.64 0.548 4.76 1.83 1.02 -- -0.173 -- 0.631 16.6 -- -- -- --
136.72 0.548 4.76 1.83 1.02 -- -- -- 0.63 16.6 -- -- -- --
134.07 0.539 4.76 1.82 -- -1.13 -- -- 0.568 -- 8.351 569 -- --
212.98 0.68 4.84 -- 0.975 -0.568 -- -- 0.277 16.7 23.48 1445 -- --
192.24 0.648 4.75 1.79 -- -- -- -- 0.604 -- -- -- -- --
225.3 0.702 4.8 -- 0.987 -- -- -- 0.426 16.6 -- -- -- --
219.3 0.69 4.81 -- -- -1.18 -- -- 0.331 -- 16.61 569 -- --
277.13 0.777 4.8 -- -- -- -- -- 0.405 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.73 temperature 25 30 > th dose independent rect. 7 1
3 124.23 radiation 10 1440 > th dose independent sin 9 NA
5 124.33 radiation 10 1440 > th dose independent rect. 6 7
18 124.36 temperature 25 10 > th dose dependent rect. 7 1
22 124.56 radiation 10 1440 > th dose independent rect. 7 2
70 125.12 humidity 80 10 < th dose independent rect. 7 1
76 125.32 humidity 80 10 < th dose independent rect. 22 10
81 125.39 wind 9 43200 < th dose dependent rect. 2 1
85 125.47 wind 1 43200 > th dose dependent rect. 2 1
90 125.68 wind 1 14400 < th dose dependent rect. 2 1
92 125.71 radiation 20 1440 < th dose dependent rect. 6 7
95 125.77 radiation 30 1440 < th dose dependent rect. 7 3
96 125.78 atmosphere 1005 720 < th dose independent rect. 19 2
113 125.86 radiation 1 1440 > th dose dependent rect. 6 4
116 125.88 radiation 1 1440 > th dose dependent rect. 16 18
119 125.91 radiation 10 1440 < th dose dependent rect. 6 10
121 125.91 radiation 40 1440 < th dose dependent rect. 16 18
123 125.94 radiation 20 1440 < th dose dependent rect. 16 21
138 126.06 atmosphere 1005 14400 < th dose independent rect. 17 1
139 126.06 atmosphere 1005 720 < th dose independent rect. 15 9
144 126.06 radiation 20 1440 < th dose dependent rect. 20 17
146 126.07 radiation 20 1440 < th dose dependent sin 4 NA
166 126.09 radiation 20 1440 < th dose dependent rect. 11 22
189 126.13 atmosphere 1005 720 < th dose independent rect. 18 5
190 126.15 radiation 20 1440 < th dose independent rect. 8 1
210 126.19 radiation 40 1440 < th dose dependent rect. 19 15
216 126.20 radiation 40 1440 < th dose dependent rect. 22 12
226 126.24 humidity 90 14400 < th dose independent rect. 14 1
228 126.24 radiation 10 1440 < th dose dependent rect. 6 15
248 126.26 radiation 10 1440 < th dose dependent sin 1 NA
269 126.29 atmosphere 1005 14400 > th dose independent rect. 17 2
274 126.31 radiation 20 1440 < th dose dependent rect. 11 1
286 126.35 radiation 10 1440 < th dose dependent rect. 19 23
306 126.36 radiation 10 1440 < th dose dependent rect. 22 19
310 126.36 radiation 10 1440 < th dose dependent rect. 20 21
323 126.38 humidity 90 14400 > th dose independent rect. 13 2
326 126.38 wind 1 43200 > th dose dependent rect. 1 3
345 126.42 atmosphere 1005 270 < th dose independent rect. 15 12
420 126.50 radiation 10 1440 > th dose dependent sin 10 NA
483 126.54 radiation 20 1440 < th dose independent rect. 17 20
515 126.59 radiation 20 1440 < th dose independent rect. 6 7
522 126.59 radiation 20 1440 < th dose independent rect. 22 15
523 126.59 radiation 20 1440 < th dose independent rect. 20 17
532 126.60 wind 1 43200 > th dose dependent rect. 23 6
581 126.62 radiation 10 1440 < th dose dependent rect. 22 23
582 126.63 radiation 10 30 > th dose independent rect. 7 1
586 126.63 radiation 10 1440 < th dose dependent no NA NA
619 126.64 wind 1 14400 < th dose independent rect. 2 1
704 126.70 radiation 20 1440 < th dose independent sin 8 NA
711 126.70 wind 9 43200 < th dose dependent rect. 1 3
737 126.75 atmosphere 1005 270 < th dose independent sin 15 NA
747 126.77 radiation 10 1440 > th dose independent rect. 11 22
776 126.80 radiation 20 1440 < th dose independent rect. 17 17
830 126.88 radiation 20 1440 < th dose independent rect. 22 12
831 126.88 radiation 20 1440 < th dose independent rect. 20 14
851 126.91 wind 9 43200 < th dose dependent rect. 23 6
878 126.94 radiation 20 14400 < th dose independent rect. 21 9
994 127.04 humidity 80 1440 < th dose independent rect. 7 2