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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0661700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0129) R2 : 0.00331
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0334 (0.0271) R2dN8 : 0.00427 R2N8 : 0.00331
σ : 0.243
deviance : 27.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.25 0.241 2.85 0.0325 0.0835 0.0539 -0.0737 -0.262 0.0386 11.2 80.29 45 -- --
26.52 0.242 2.85 0.017 0.097 0.0654 0.112 -- 0.0357 11.8 80 28 -- --
26.26 0.239 2.85 0.0281 0.0854 0.0556 -- -0.229 0.0382 11.3 80.05 44 -- --
26.57 0.242 2.85 0.0208 0.0919 0.0585 -- -- 0.0358 11.3 80.05 44 -- --
26.6 0.24 2.85 0.0264 -- 0.0211 -- -0.24 0.0371 -- 80.99 58 -- --
26.75 0.242 2.85 0.016 0.066 -- 0.0102 -- 0.0347 8.72 -- -- -- --
26.75 0.242 2.85 0.0162 0.0662 -- -- -- 0.0346 8.63 -- -- -- --
26.94 0.243 2.85 0.0171 -- 0.0219 -- -- 0.0351 -- 80.55 108 -- --
26.58 0.241 2.85 -- 0.0911 0.0577 -- -- 0.0335 11.3 80.05 44 -- --
27 0.243 2.85 0.0164 -- -- -- -- 0.0352 -- -- -- -- --
26.76 0.242 2.85 -- 0.0662 -- -- -- 0.0328 8.61 -- -- -- --
26.95 0.242 2.85 -- -- 0.023 -- -- 0.0332 -- 81 109 -- --
27.01 0.243 2.85 -- -- -- -- -- 0.0334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.71 radiation 1.0 270 > th dose independent rect. 4 1
11 24.71 radiation 1.0 270 > th dose dependent rect. 4 1
21 25.06 humidity 70.0 4320 > th dose independent rect. 21 1
22 25.06 radiation 10.0 1440 < th dose dependent rect. 21 1
23 25.07 temperature 10.0 1440 > th dose independent rect. 21 1
26 25.07 temperature 30.0 1440 < th dose independent rect. 21 1
30 25.07 humidity 50.0 1440 > th dose independent rect. 21 1
36 25.07 atmosphere 995.0 1440 > th dose independent rect. 21 1
37 25.07 radiation 1.0 1440 < th dose independent rect. 21 1
57 25.07 temperature 10.0 1440 > th dose independent rect. 22 23
63 25.08 wind 3.0 30 > th dose independent rect. 20 1
64 25.08 temperature 25.0 30 > th dose independent rect. 20 1
65 25.08 atmosphere 1005.0 30 > th dose dependent rect. 20 1
66 25.09 humidity 80.0 30 > th dose independent rect. 20 1
67 25.09 humidity 90.0 30 < th dose independent rect. 20 1
68 25.09 atmosphere 1005.0 30 > th dose independent rect. 20 1
69 25.09 wind 1.0 30 > th dose dependent rect. 20 1
70 25.09 temperature 10.0 30 > th dose dependent rect. 20 1
73 25.09 atmosphere 995.0 30 > th dose dependent rect. 20 1
76 25.10 wind 5.0 30 < th dose independent rect. 20 1
79 25.10 temperature 10.0 30 > th dose independent rect. 20 1
82 25.10 temperature 30.0 30 < th dose independent rect. 20 1
83 25.10 humidity 50.0 30 > th dose independent rect. 20 1
86 25.10 atmosphere 995.0 30 > th dose independent rect. 20 1
88 25.10 atmosphere 1010.0 30 < th dose independent rect. 20 1
90 25.10 radiation 1.0 30 < th dose independent rect. 20 1
95 25.10 precipitation 0.1 30 < th dose independent rect. 20 1
96 25.10 wind 9.0 30 < th dose independent rect. 21 23
97 25.10 temperature 10.0 30 > th dose independent rect. 21 23
98 25.10 wind 9.0 30 < th dose dependent rect. 20 1
100 25.10 humidity 50.0 30 > th dose dependent rect. 20 1
103 25.10 radiation 1.0 30 < th dose dependent rect. 20 1
108 25.10 radiation 40.0 14400 < th dose dependent rect. 21 1
109 25.10 precipitation 0.1 30 < th dose dependent rect. 20 1
117 25.12 humidity 90.0 30 < th dose dependent rect. 20 1
121 25.13 atmosphere 1015.0 30 < th dose dependent rect. 20 1
123 25.14 temperature 30.0 30 < th dose dependent rect. 20 1
126 25.15 wind 9.0 1440 < th dose independent rect. 21 1
190 25.44 atmosphere 995.0 30 > th dose independent rect. 21 23
191 25.44 precipitation 0.1 30 < th dose independent rect. 21 23
192 25.44 precipitation 0.1 30 < th dose dependent rect. 21 23
199 25.54 atmosphere 1005.0 30 > th dose independent rect. 7 1
201 25.56 humidity 90.0 30 < th dose independent rect. 7 1
210 25.60 wind 3.0 10 < th dose independent rect. 7 1
247 25.75 humidity 50.0 30 > th dose independent rect. 21 23
254 25.78 precipitation 0.1 1440 < th dose independent rect. 21 1
257 25.78 precipitation 0.1 1440 < th dose dependent rect. 21 1
264 25.82 wind 1.0 30 > th dose independent rect. 21 23
269 25.85 humidity 80.0 10 > th dose independent rect. 8 1
271 25.85 wind 1.0 270 < th dose independent rect. 5 2
281 25.89 temperature 25.0 90 < th dose independent rect. 6 2
285 25.90 temperature 10.0 30 > th dose dependent rect. 20 12
289 25.91 radiation 10.0 10 < th dose dependent rect. 21 23
290 25.92 wind 1.0 720 > th dose independent rect. 8 1
291 25.92 temperature 20.0 30 > th dose independent rect. 7 1
293 25.92 wind 5.0 30 < th dose independent rect. 20 12
300 25.93 wind 5.0 10 < th dose dependent rect. 7 1
302 25.93 temperature 10.0 30 > th dose dependent rect. 8 12
305 25.94 humidity 60.0 720 > th dose independent rect. 8 1
310 25.95 radiation 1.0 720 > th dose independent rect. 8 1
313 25.95 wind 9.0 10 < th dose independent rect. 8 12
315 25.95 radiation 40.0 10 < th dose independent rect. 20 12
317 25.95 temperature 10.0 720 > th dose dependent rect. 8 1
318 25.95 temperature 10.0 720 > th dose dependent rect. 20 1
319 25.95 atmosphere 1000.0 30 > th dose dependent rect. 7 1
320 25.96 wind 7.0 720 < th dose independent rect. 8 1
333 25.96 radiation 30.0 30 < th dose independent rect. 7 1
349 25.96 atmosphere 1015.0 30 < th dose independent rect. 21 23
359 25.97 temperature 10.0 720 > th dose independent rect. 8 1
363 25.97 atmosphere 995.0 720 > th dose independent rect. 8 1
364 25.97 atmosphere 1015.0 720 < th dose independent rect. 8 1
368 25.97 temperature 10.0 10 > th dose independent rect. 8 12
372 25.97 temperature 10.0 1440 > th dose independent rect. 9 12
375 25.97 temperature 10.0 10 > th dose independent rect. 20 12
377 25.97 temperature 10.0 1440 > th dose independent rect. 21 12
380 25.97 temperature 30.0 10 < th dose independent rect. 20 12
382 25.97 humidity 50.0 10 > th dose independent rect. 20 12
386 25.97 humidity 50.0 1440 > th dose independent rect. 21 12
388 25.97 atmosphere 995.0 10 > th dose independent rect. 8 12
390 25.97 atmosphere 995.0 10 > th dose independent rect. 20 12
392 25.97 atmosphere 995.0 1440 > th dose independent rect. 21 12
393 25.97 atmosphere 1015.0 10 < th dose independent rect. 8 12
396 25.97 precipitation 0.1 10 < th dose independent rect. 8 12
397 25.97 precipitation 0.1 30 < th dose independent rect. 20 12
398 25.97 temperature 10.0 720 > th dose independent rect. 9 23
404 25.97 precipitation 0.1 10 < th dose dependent rect. 8 12
405 25.97 precipitation 0.1 30 < th dose dependent rect. 20 12
406 25.98 atmosphere 1015.0 720 < th dose independent rect. 20 1
407 25.98 precipitation 0.1 720 < th dose independent rect. 8 1
414 25.98 precipitation 0.1 720 < th dose dependent rect. 8 1
418 25.99 wind 1.0 720 > th dose independent rect. 20 1
421 25.99 wind 1.0 30 > th dose independent rect. 8 12
434 26.00 humidity 80.0 30 > th dose independent rect. 7 14
440 26.01 atmosphere 1015.0 30 < th dose independent rect. 20 12
450 26.01 wind 9.0 10 < th dose dependent rect. 20 12
459 26.02 wind 1.0 30 > th dose independent rect. 8 23
462 26.02 temperature 30.0 30 < th dose independent rect. 21 23
468 26.03 radiation 1.0 30 > th dose independent rect. 7 1
482 26.03 temperature 15.0 30 > th dose dependent rect. 7 1
496 26.06 wind 1.0 30 > th dose independent rect. 7 1
498 26.06 temperature 30.0 720 < th dose independent rect. 8 1
505 26.06 radiation 1.0 30 < th dose independent rect. 21 23
535 26.07 atmosphere 1000.0 10 > th dose independent rect. 8 23
538 26.07 precipitation 0.1 720 < th dose independent rect. 21 23
544 26.07 precipitation 0.1 720 < th dose dependent rect. 21 23
559 26.09 humidity 90.0 90 < th dose independent rect. 2 6
562 26.09 wind 9.0 30 < th dose independent rect. 8 23
572 26.10 temperature 10.0 10 > th dose independent rect. 7 1
583 26.10 humidity 50.0 10 > th dose independent rect. 7 1
595 26.10 atmosphere 1015.0 10 < th dose independent rect. 7 1
600 26.10 precipitation 0.1 10 < th dose independent rect. 7 1
605 26.10 temperature 25.0 720 < th dose independent rect. 2 6
607 26.10 humidity 50.0 30 > th dose independent rect. 8 12
612 26.10 temperature 25.0 30 > th dose independent rect. 22 22
613 26.10 temperature 10.0 10 > th dose independent rect. 8 23
621 26.10 precipitation 0.1 10 < th dose dependent rect. 7 1
640 26.11 humidity 80.0 30 > th dose independent rect. 2 19
644 26.11 precipitation 0.1 30 < th dose independent rect. 8 23
655 26.11 temperature 10.0 30 > th dose dependent rect. 21 23
656 26.11 precipitation 0.1 30 < th dose dependent rect. 8 23
677 26.12 temperature 25.0 30 > th dose independent rect. 24 20
689 26.13 humidity 90.0 720 < th dose independent rect. 8 1
709 26.13 humidity 90.0 90 < th dose independent rect. 8 11
715 26.13 radiation 40.0 30 < th dose dependent rect. 7 1
735 26.14 precipitation 0.1 720 < th dose independent rect. 9 23
742 26.14 precipitation 0.1 720 < th dose dependent rect. 9 23
751 26.15 temperature 25.0 720 > th dose independent rect. 3 6
758 26.15 humidity 80.0 10 > th dose independent rect. 20 16
760 26.15 temperature 30.0 10 < th dose independent rect. 8 23
771 26.15 temperature 25.0 10 > th dose dependent rect. 20 9
780 26.16 humidity 80.0 720 > th dose independent rect. 21 4
782 26.16 radiation 10.0 720 < th dose independent rect. 21 8
792 26.16 humidity 80.0 10 > th dose independent rect. 2 22
796 26.16 atmosphere 995.0 720 > th dose dependent rect. 20 1
798 26.16 temperature 25.0 720 > th dose dependent rect. 5 3
804 26.16 radiation 40.0 30 < th dose dependent rect. 20 12
812 26.17 humidity 80.0 10 > th dose independent rect. 7 5
813 26.17 temperature 15.0 720 > th dose independent rect. 21 8
848 26.17 radiation 10.0 720 < th dose dependent rect. 21 8
854 26.18 humidity 90.0 720 < th dose independent rect. 20 1
867 26.18 wind 9.0 720 < th dose independent rect. 21 12
869 26.18 atmosphere 1015.0 720 < th dose independent rect. 9 12
871 26.18 humidity 80.0 30 > th dose independent rect. 18 15
872 26.18 temperature 15.0 720 > th dose independent rect. 17 16
875 26.18 temperature 15.0 720 > th dose independent rect. 13 20
883 26.18 atmosphere 995.0 720 > th dose independent rect. 21 23
884 26.18 wind 1.0 720 > th dose dependent rect. 20 1
906 26.19 humidity 80.0 720 < th dose independent rect. 23 3
907 26.19 wind 1.0 720 > th dose independent rect. 9 4
908 26.19 temperature 10.0 720 > th dose independent rect. 9 4
909 26.19 temperature 10.0 720 > th dose independent rect. 21 4
910 26.19 temperature 30.0 720 < th dose independent rect. 21 4
912 26.19 humidity 50.0 720 > th dose independent rect. 21 4
915 26.19 atmosphere 995.0 720 > th dose independent rect. 9 4
916 26.19 atmosphere 995.0 720 > th dose independent rect. 21 4
917 26.19 atmosphere 1015.0 720 < th dose independent rect. 9 4
918 26.19 radiation 1.0 720 < th dose independent rect. 21 4
923 26.19 precipitation 0.1 720 < th dose independent rect. 9 4
934 26.19 temperature 10.0 720 > th dose independent rect. 1 20
942 26.19 wind 9.0 720 < th dose dependent rect. 8 1
946 26.19 humidity 50.0 720 > th dose dependent rect. 21 4
947 26.19 radiation 1.0 720 < th dose dependent rect. 21 4
952 26.19 precipitation 0.1 720 < th dose dependent rect. 9 4
956 26.20 humidity 80.0 720 < th dose independent rect. 23 1
957 26.20 radiation 40.0 720 < th dose independent rect. 8 1
979 26.20 wind 9.0 720 < th dose independent rect. 21 4