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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0661600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-amylase/trypsin inhibitor (Antifungal protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.16 (0.0504) R2 : 0.393
β1 : -0.736 (0.231) R2dD : 0.0264 R2D : 0.0605
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.34 (0.112) R2dE : 0.234 R2E : 0.0977
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.11 (0.63) R2dD*E : 0.0588 R2D*E : 0.0319
γ1 : 0.971 (0.116) R2dN8 : 0.164 R2N8 : 0.017
σ : 0.877
deviance : 354.61
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.9
memory length : 385
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
336.7 0.862 4.2 -1.11 0.775 -0.846 -1.18 1.91 0.789 7.11 25.6 245 -- --
344.68 0.865 4.25 -1.61 0.817 -0.734 -1.84 -- 0.632 6.63 25.69 275 -- --
339.95 0.859 4.18 -1.03 0.757 -0.869 -- 2.31 0.828 7.18 25.6 245 -- --
353.44 0.876 4.25 -1.64 0.824 -0.737 -- -- 0.616 7.18 25.62 245 -- --
354.61 0.877 4.16 -0.736 -- -1.34 -- 3.11 0.971 -- 25.9 385 -- --
370.5 0.902 4.31 -1.84 1.35 -- -1.82 -- 0.313 6.25 -- -- -- --
378.71 0.911 4.31 -1.86 1.34 -- -- -- 0.32 6.25 -- -- -- --
373.22 0.9 4.26 -1.42 -- -1.16 -- -- 0.747 -- 25.9 367 -- --
423.27 0.958 4.2 -- 0.781 -0.84 -- -- 0.824 7.05 25.69 245 -- --
472.08 1.02 4.33 -1.82 -- -- -- -- 0.349 -- -- -- -- --
469.55 1.01 4.26 -- 1.32 -- -- -- 0.527 6.32 -- -- -- --
429.87 0.966 4.2 -- -- -1.4 -- -- 0.941 -- 25.9 387 -- --
559.46 1.1 4.28 -- -- -- -- -- 0.551 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 332.78 wind 7 43200 > th dose independent rect. 12 3
2 332.96 atmosphere 1010 14400 > th dose independent rect. 21 1
4 333.36 atmosphere 1010 14400 > th dose independent rect. 4 4
5 333.41 atmosphere 1010 14400 > th dose independent rect. 4 2
6 333.42 atmosphere 1010 14400 < th dose independent rect. 20 1
7 333.42 wind 7 43200 < th dose independent rect. 12 3
16 333.59 atmosphere 1010 14400 < th dose independent rect. 4 1
25 333.84 temperature 25 270 > th dose independent rect. 8 16
38 334.24 atmosphere 1010 14400 > th dose independent rect. 20 13
83 334.62 atmosphere 1010 14400 > th dose independent rect. 18 7
93 334.68 atmosphere 1010 14400 < th dose independent rect. 3 6
114 334.78 atmosphere 1010 14400 > th dose independent sin 9 NA
136 334.88 wind 7 43200 > th dose dependent rect. 14 1
148 334.99 atmosphere 1010 14400 < th dose independent rect. 20 11
166 335.06 atmosphere 1010 14400 < th dose independent rect. 20 5
168 335.06 atmosphere 1010 14400 < th dose independent rect. 20 13
182 335.14 atmosphere 1010 14400 < th dose independent rect. 18 8
252 335.38 atmosphere 1010 14400 > th dose independent rect. 18 1
272 335.47 atmosphere 1010 14400 > th dose independent rect. 23 1
275 335.48 atmosphere 1010 14400 < th dose independent sin 10 NA
551 336.39 atmosphere 1010 14400 > th dose independent no NA NA
556 336.40 atmosphere 1010 14400 > th dose independent rect. 23 23
583 336.48 atmosphere 1010 14400 > th dose independent rect. 3 23
637 336.62 atmosphere 1010 14400 < th dose independent rect. 8 1
647 336.63 atmosphere 1010 14400 < th dose independent rect. 8 23
659 336.66 atmosphere 1010 14400 < th dose independent rect. 23 23
667 336.70 atmosphere 1010 14400 < th dose independent no NA NA
686 336.75 atmosphere 1010 14400 < th dose independent rect. 3 23
850 337.22 temperature 10 270 > th dose dependent rect. 8 16
901 337.44 atmosphere 1010 14400 < th dose independent rect. 12 1
958 337.79 atmosphere 1010 14400 > th dose independent rect. 12 1
992 337.96 radiation 10 43200 < th dose dependent rect. 23 9
996 337.97 radiation 10 43200 < th dose dependent rect. 1 7
1000 337.98 radiation 10 43200 < th dose dependent rect. 4 4