Os03g0659900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to S3 self-incompatibility locus-linked pollen 3.15 protein.
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Os03g0659900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to S3 self-incompatibility locus-linked pollen 3.15 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.77 | 0.243 | 11.5 | -0.43 | 0.594 | -0.272 | -0.857 | -0.281 | 0.031 | 23.9 | 49.16 | 6940 | -- | -- |
| 26.9 | 0.242 | 11.5 | -0.425 | 0.591 | -0.335 | -0.839 | -- | 0.032 | 23.9 | 49.04 | 6940 | -- | -- |
| 29.98 | 0.255 | 11.5 | -0.424 | 0.602 | -0.293 | -- | -0.254 | 0.0302 | 24 | 49 | 6940 | -- | -- |
| 30.07 | 0.255 | 11.5 | -0.394 | 0.597 | -0.375 | -- | -- | 0.0323 | 24 | 49.01 | 6940 | -- | -- |
| 52.14 | 0.336 | 11.5 | -0.418 | -- | -0.284 | -- | -0.213 | 0.0308 | -- | 49 | 7300 | -- | -- |
| 28.68 | 0.251 | 11.5 | -0.53 | 0.591 | -- | -0.907 | -- | 0.0448 | 23.8 | -- | -- | -- | -- |
| 32.25 | 0.266 | 11.5 | -0.494 | 0.594 | -- | -- | -- | 0.0485 | 23.9 | -- | -- | -- | -- |
| 51.87 | 0.335 | 11.4 | -0.353 | -- | -0.394 | -- | -- | 0.0604 | -- | 49.97 | 7295 | -- | -- |
| 33.32 | 0.269 | 11.5 | -- | 0.579 | -0.559 | -- | -- | 0.026 | 23.4 | 50 | 5292 | -- | -- |
| 54.48 | 0.345 | 11.4 | -0.476 | -- | -- | -- | -- | 0.0564 | -- | -- | -- | -- | -- |
| 38.68 | 0.291 | 11.4 | -- | 0.588 | -- | -- | -- | 0.104 | 23.8 | -- | -- | -- | -- |
| 55.22 | 0.346 | 11.5 | -- | -- | -0.474 | -- | -- | 0.0555 | -- | 49 | 7300 | -- | -- |
| 60.47 | 0.363 | 11.4 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.09 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 4 | 26.12 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 20 | 26.35 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 23 | 26.37 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 34 | 26.40 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 36 | 26.40 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 68 | 26.45 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 70 | 26.45 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 99 | 26.52 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 118 | 26.57 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 13 | 3 |
| 131 | 26.60 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 149 | 26.62 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 182 | 26.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 225 | 26.66 | radiation | 40 | 43200 | < th | dose independent | sin | 0 | NA |
| 234 | 26.66 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 274 | 26.66 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 299 | 26.67 | radiation | 40 | 43200 | < th | dose independent | sin | 21 | NA |
| 304 | 26.67 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 319 | 26.67 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 8 |
| 581 | 26.68 | radiation | 40 | 43200 | < th | dose independent | sin | 19 | NA |
| 583 | 26.68 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 3 |
| 584 | 26.68 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 658 | 26.69 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 693 | 26.69 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 718 | 26.69 | radiation | 30 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 772 | 26.70 | radiation | 40 | 43200 | > th | dose dependent | sin | 6 | NA |
| 956 | 26.71 | radiation | 30 | 43200 | > th | dose dependent | sin | 2 | NA |
| 965 | 26.71 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 2 |