Os03g0659700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LOB domain protein 12.
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Os03g0659700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LOB domain protein 12.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.35 | 0.534 | 5.3 | -0.707 | 0.911 | 0.372 | 1.9 | 4.94 | -0.174 | 0.265 | 29.7 | 4266 | -- | -- |
| 133.54 | 0.538 | 5.19 | 0.207 | 0.919 | 0.865 | 1.33 | -- | -0.0162 | 0.15 | 29.5 | 4597 | -- | -- |
| 143.64 | 0.558 | 5.28 | -0.669 | 0.924 | 0.469 | -- | 3.88 | -0.16 | 23.8 | 29.5 | 4649 | -- | -- |
| 145.56 | 0.562 | 5.17 | 0.205 | 0.879 | 0.906 | -- | -- | 0.0433 | 23.7 | 28.93 | 4640 | -- | -- |
| 184.33 | 0.636 | 5.16 | 0.00484 | -- | 0.759 | -- | 0.734 | 0.0323 | -- | 29.5 | 4649 | -- | -- |
| 162.48 | 0.598 | 5.17 | 0.00263 | 0.845 | -- | 1.74 | -- | 0.0104 | 0.0762 | -- | -- | -- | -- |
| 175.37 | 0.62 | 5.18 | -0.0643 | 0.841 | -- | -- | -- | 0.00385 | 23.8 | -- | -- | -- | -- |
| 179.63 | 0.627 | 5.14 | 0.117 | -- | 0.769 | -- | -- | 0.0736 | -- | 28.93 | 4640 | -- | -- |
| 146.65 | 0.564 | 5.17 | -- | 0.886 | 0.869 | -- | -- | 0.0347 | 23.7 | 29 | 4640 | -- | -- |
| 219.86 | 0.693 | 5.16 | -0.0396 | -- | -- | -- | -- | 0.0145 | -- | -- | -- | -- | -- |
| 175.48 | 0.62 | 5.17 | -- | 0.84 | -- | -- | -- | 0.011 | 23.8 | -- | -- | -- | -- |
| 179.99 | 0.627 | 5.15 | -- | -- | 0.76 | -- | -- | 0.0601 | -- | 28.93 | 4640 | -- | -- |
| 219.91 | 0.692 | 5.16 | -- | -- | -- | -- | -- | 0.0189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.76 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 2 | 126.97 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 4 | 127.12 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 9 | 127.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 27 | 129.10 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 30 | 129.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 33 | 129.25 | temperature | 30.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 34 | 129.25 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 36 | 129.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 41 | 129.30 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 49 | 129.35 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 64 | 129.37 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 71 | 129.38 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 73 | 129.39 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 23 |
| 78 | 129.41 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 123 | 129.45 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 147 | 129.49 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 150 | 129.50 | temperature | 30.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 163 | 129.56 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 226 | 129.66 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 242 | 129.67 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 262 | 129.71 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 22 |
| 269 | 129.74 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 273 | 129.75 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 296 | 129.79 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 298 | 129.79 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 306 | 129.81 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 364 | 129.91 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 372 | 129.92 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 457 | 130.06 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 461 | 130.07 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 497 | 130.07 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 22 |
| 536 | 130.08 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 20 |
| 649 | 130.28 | temperature | 30.0 | 4320 | > th | dose independent | no | NA | NA |
| 800 | 130.38 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 816 | 130.39 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 833 | 130.40 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 893 | 130.51 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 895 | 130.52 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 923 | 130.66 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 932 | 130.70 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 959 | 130.77 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 19 |
| 972 | 130.88 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 981 | 130.92 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |