Os03g0658000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0658000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 398.52 | 0.938 | 4.12 | -1.45 | 0.5 | -1.4 | 1.65 | -1.3 | 1.07 | 0.278 | 25.49 | 4145 | -- | -- |
| 398.98 | 0.93 | 4.09 | -1.16 | 0.503 | -1.52 | 1.61 | -- | 1.12 | 0.197 | 25.5 | 4133 | -- | -- |
| 409.77 | 0.943 | 4.12 | -1.48 | 0.471 | -1.37 | -- | -1.13 | 1.08 | 23.8 | 25.4 | 4255 | -- | -- |
| 410 | 0.943 | 4.09 | -1.21 | 0.482 | -1.5 | -- | -- | 1.13 | 23.8 | 25.4 | 4210 | -- | -- |
| 421.44 | 0.956 | 4.13 | -1.66 | -- | -1.23 | -- | -1.89 | 1.05 | -- | 25.41 | 4545 | -- | -- |
| 468.15 | 1.01 | 4.09 | -1.64 | 0.366 | -- | 1.44 | -- | 1.09 | 23.9 | -- | -- | -- | -- |
| 476.83 | 1.02 | 4.09 | -1.69 | 0.367 | -- | -- | -- | 1.09 | 23.2 | -- | -- | -- | -- |
| 422.41 | 0.957 | 4.08 | -1.21 | -- | -1.43 | -- | -- | 1.14 | -- | 25.48 | 4465 | -- | -- |
| 444.55 | 0.982 | 4.03 | -- | 0.521 | -1.71 | -- | -- | 1.39 | 23.5 | 24.1 | 5331 | -- | -- |
| 485.27 | 1.03 | 4.09 | -1.68 | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
| 552.13 | 1.1 | 4.05 | -- | 0.353 | -- | -- | -- | 1.28 | 22.9 | -- | -- | -- | -- |
| 405.58 | 0.938 | 3.86 | -- | -- | -2.12 | -- | -- | 2.08 | -- | 22.12 | 18937 | -- | -- |
| 559.84 | 1.1 | 4.04 | -- | -- | -- | -- | -- | 1.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 377.73 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 2 | 379.27 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 4 | 380.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 6 | 381.26 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 20 | 382.93 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 25 | 383.40 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 29 | 383.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 32 | 383.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 9 |
| 38 | 383.78 | temperature | 25 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 56 | 383.93 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 60 | 383.95 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 74 | 384.10 | temperature | 25 | 14400 | > th | dose dependent | sin | 4 | NA |
| 80 | 384.14 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 9 |
| 126 | 384.41 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 128 | 384.41 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 143 | 384.48 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 146 | 384.49 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 162 | 384.57 | temperature | 25 | 14400 | > th | dose independent | sin | 5 | NA |
| 187 | 384.70 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 225 | 384.86 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 234 | 384.89 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 306 | 385.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 21 |
| 308 | 385.12 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 319 | 385.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 360 | 385.23 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 366 | 385.24 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 374 | 385.25 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 396 | 385.29 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 451 | 385.44 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 457 | 385.45 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 460 | 385.46 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 470 | 385.49 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 515 | 385.58 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 21 |
| 536 | 385.62 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 548 | 385.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 549 | 385.64 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 9 |
| 551 | 385.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 552 | 385.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 22 |
| 578 | 385.69 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 634 | 385.79 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 20 |
| 661 | 385.83 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 669 | 385.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 691 | 385.89 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 723 | 385.94 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 740 | 385.97 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 776 | 386.02 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 858 | 386.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 905 | 386.24 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 2 |