Os03g0657400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-binding WRKY domain containing protein.
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Os03g0657400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-binding WRKY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 529.1 | 1.08 | 6.37 | 2.6 | 1.2 | 4 | 1.17 | 2.8 | 0.822 | 22.5 | 1.01 | 10137 | 5.15 | -- |
| 539.52 | 1.08 | 6.43 | 1.85 | 1.3 | 4.12 | 1.69 | -- | 0.637 | 22.1 | 1.05 | 10134 | 4.67 | -- |
| 531.92 | 1.07 | 6.37 | 2.41 | 1.19 | 4.41 | -- | 3.27 | 0.828 | 22.3 | 1.018 | 10118 | 3.79 | -- |
| 541.19 | 1.08 | 6.43 | 1.54 | 1.21 | 4.3 | -- | -- | 0.607 | 22.4 | 1.055 | 10123 | 4.01 | -- |
| 616.1 | 1.16 | 6.34 | 2.45 | -- | 4.33 | -- | 3.31 | 0.769 | -- | 1.01 | 10097 | 4.12 | -- |
| 885.83 | 1.4 | 6.18 | 2.42 | 1.24 | -- | 1.32 | -- | 1.7 | 22.9 | -- | -- | -- | -- |
| 893.12 | 1.4 | 6.19 | 2.37 | 1.23 | -- | -- | -- | 1.69 | 22.9 | -- | -- | -- | -- |
| 626.81 | 1.17 | 6.41 | 1.61 | -- | 4.31 | -- | -- | 0.593 | -- | 1.06 | 10096 | 4.28 | -- |
| 564.32 | 1.11 | 6.41 | -- | 1.1 | 4.25 | -- | -- | 0.435 | 22.2 | 0.9917 | 14445 | 4.01 | -- |
| 987.36 | 1.47 | 6.15 | 2.39 | -- | -- | -- | -- | 1.7 | -- | -- | -- | -- | -- |
| 1040.78 | 1.51 | 6.24 | -- | 1.25 | -- | -- | -- | 1.43 | 23 | -- | -- | -- | -- |
| 631.19 | 1.17 | 6.51 | -- | -- | 4.22 | -- | -- | 0.359 | -- | 1.02 | 15850 | 4.02 | -- |
| 1138.43 | 1.57 | 6.21 | -- | -- | -- | -- | -- | 1.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 514.25 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 2 | 516.30 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 10 | 522.47 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 15 | 524.03 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 26 | 524.40 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 19 |
| 27 | 524.41 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 36 | 524.73 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 37 | 524.83 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 83 | 528.83 | radiation | 1.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 89 | 528.99 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 110 | 529.39 | radiation | 1.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 122 | 529.71 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 123 | 529.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 131 | 529.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 189 | 531.36 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 241 | 533.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 245 | 533.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 271 | 534.31 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 276 | 534.65 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 277 | 534.67 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 399 | 536.81 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 400 | 536.81 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 418 | 537.75 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 421 | 538.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 436 | 538.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 449 | 538.86 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 450 | 538.88 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 21 |
| 453 | 538.89 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 456 | 538.89 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 481 | 538.98 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 520 | 539.36 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 646 | 543.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 664 | 544.33 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 679 | 544.94 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 689 | 545.25 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 691 | 545.30 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 697 | 545.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 701 | 545.40 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 709 | 546.14 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 710 | 546.14 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 726 | 546.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 728 | 546.47 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 20 |
| 741 | 546.79 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 752 | 546.87 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 834 | 548.59 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 843 | 548.96 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 853 | 549.03 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 855 | 549.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 18 |
| 868 | 549.31 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 871 | 549.35 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 890 | 549.49 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 893 | 549.50 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 916 | 549.97 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 922 | 550.13 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 929 | 550.25 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 949 | 550.75 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 21 |
| 952 | 550.76 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 953 | 550.76 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 23 |