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Os03g0656900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NusB/RsmB/TIM44 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0292) R2 : 0.823
β1 : 1.74 (0.107) R2dD : 0.107 R2D : 0.085
β2 : 2.98 (0.0744) R2dC : 0.63 R2C : 0.574
β3 : -1.01 (0.0556) R2dE : 0.133 R2E : 0.0625
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.248 (0.063) R2dN8 : 0.00832 R2N8 : 0.0236
σ : 0.543
deviance : 135.91
__
_____
C
peak time of C : 19.9
E
wheather : temperature
threshold : 19.92
memory length : 78
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 16.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128 0.532 12.6 1.9 2.97 -0.988 -1.2 1.06 -0.193 19.8 20 91 17 16
133.74 0.539 12.7 1.79 2.97 -0.98 -0.803 -- -0.233 19.8 19.93 84 17 16.2
131.96 0.535 12.7 1.91 2.97 -1.01 -- 0.888 -0.199 19.9 19.92 90 17 16.1
135.91 0.543 12.7 1.74 2.98 -1.01 -- -- -0.248 19.9 19.92 78 17.1 16.1
186.59 0.636 12.7 1.58 -- -2.96 -- 3.08 -0.633 -- 14.3 792 17.3 14.3
184.79 0.637 12.7 1.53 3.05 -- -1.48 -- -0.43 18.8 -- -- -- --
190.41 0.646 12.7 1.56 3.05 -- -- -- -0.434 18.8 -- -- -- --
168.22 0.604 12.7 1.47 -- -3.4 -- -- -0.469 -- 14.2 862 16.6 14.4
212.9 0.68 12.7 -- 2.93 -0.83 -- -- -0.431 19.7 20.1 60 17.3 16.1
676.35 1.22 12.6 1.49 -- -- -- -- -0.493 -- -- -- -- --
254.31 0.746 12.7 -- 3.03 -- -- -- -0.607 18.8 -- -- -- --
230.63 0.707 12.7 -- -- -3.37 -- -- -0.501 -- 14.4 866 16.6 14.5
734.87 1.27 12.7 -- -- -- -- -- -0.658 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.46 temperature 20.0 90 > th dose independent rect. 17 16
2 132.13 temperature 20.0 90 > th dose independent rect. 19 14
6 133.79 temperature 10.0 270 > th dose dependent rect. 7 8
8 134.75 temperature 30.0 10 < th dose dependent rect. 22 8
9 134.76 temperature 20.0 270 > th dose dependent rect. 8 6
24 136.46 temperature 25.0 270 > th dose independent rect. 8 6
29 137.14 temperature 20.0 90 > th dose independent rect. 5 4
40 138.17 temperature 20.0 10 > th dose dependent rect. 9 8
55 139.25 temperature 15.0 270 > th dose dependent rect. 4 3
61 139.82 temperature 10.0 270 > th dose dependent rect. 17 14
63 139.91 temperature 15.0 90 > th dose dependent rect. 19 14
98 141.35 wind 7.0 270 < th dose independent rect. 7 21
100 141.46 temperature 20.0 10 > th dose dependent rect. 5 4
105 141.64 humidity 90.0 30 < th dose independent rect. 6 3
106 141.70 radiation 1.0 90 > th dose independent rect. 5 4
120 141.85 temperature 15.0 10 > th dose dependent rect. 20 13
132 142.21 wind 7.0 270 < th dose independent rect. 8 19
139 142.42 temperature 25.0 270 > th dose dependent rect. 23 14
203 143.80 radiation 40.0 90 < th dose independent rect. 5 18
233 144.37 temperature 25.0 270 > th dose dependent sin 6 NA
249 144.69 radiation 1.0 90 < th dose independent rect. 22 9
252 144.81 wind 5.0 30 < th dose independent rect. 6 3
255 144.83 wind 5.0 30 < th dose independent rect. 23 7
256 144.83 wind 7.0 10 < th dose dependent rect. 6 3
265 144.94 humidity 70.0 30 > th dose independent rect. 6 4
273 145.12 temperature 30.0 10 < th dose independent rect. 6 17
282 145.23 wind 7.0 30 < th dose independent rect. 9 21
286 145.32 radiation 1.0 90 < th dose dependent rect. 22 9
304 145.52 wind 5.0 270 < th dose independent rect. 4 3
306 145.53 radiation 40.0 270 < th dose dependent rect. 3 6
307 145.53 radiation 30.0 10 < th dose dependent rect. 23 7
310 145.55 radiation 20.0 270 < th dose independent rect. 3 6
334 145.83 radiation 30.0 30 < th dose independent rect. 6 4
339 145.87 radiation 40.0 10 < th dose dependent rect. 6 17
344 145.92 radiation 20.0 10 < th dose independent rect. 6 17
346 145.93 precipitation 0.1 270 < th dose independent rect. 7 21
347 145.93 precipitation 0.1 270 < th dose dependent rect. 7 21
376 146.30 radiation 1.0 90 > th dose independent sin 10 NA
378 146.34 radiation 1.0 90 < th dose independent sin 10 NA
389 146.47 temperature 10.0 10 > th dose independent rect. 23 7
390 146.47 temperature 30.0 10 < th dose independent rect. 23 7
391 146.47 humidity 50.0 10 > th dose independent rect. 23 7
394 146.47 atmosphere 995.0 10 > th dose independent rect. 23 7
395 146.47 radiation 20.0 10 < th dose independent rect. 23 7
398 146.47 temperature 10.0 10 > th dose independent rect. 6 17
400 146.47 atmosphere 1015.0 10 < th dose independent rect. 6 17
406 146.54 radiation 10.0 270 < th dose independent rect. 4 3
434 146.76 temperature 15.0 4320 > th dose independent rect. 7 3
439 146.82 precipitation 0.1 30 < th dose independent rect. 9 21
440 146.82 precipitation 0.1 30 < th dose dependent rect. 9 21
443 146.84 temperature 30.0 10 < th dose independent rect. 6 4
446 146.88 precipitation 0.1 270 < th dose independent rect. 4 3
447 146.88 precipitation 0.1 270 < th dose dependent rect. 4 3
451 146.89 atmosphere 995.0 1440 > th dose independent rect. 7 3
452 146.89 atmosphere 1015.0 1440 < th dose independent rect. 7 3
453 146.89 precipitation 0.1 10 < th dose independent rect. 6 17
454 146.89 temperature 10.0 1440 > th dose independent rect. 10 21
458 146.89 precipitation 0.1 10 < th dose dependent rect. 6 17
460 146.90 temperature 10.0 30 > th dose independent rect. 6 3
463 146.90 humidity 50.0 30 > th dose independent rect. 6 3
465 146.90 atmosphere 995.0 30 > th dose independent rect. 6 3
466 146.90 atmosphere 1015.0 30 < th dose independent rect. 6 3
467 146.90 precipitation 0.1 30 < th dose independent rect. 6 3
468 146.90 temperature 10.0 30 > th dose independent rect. 9 21
469 146.90 precipitation 0.1 30 < th dose dependent rect. 6 3
474 146.97 temperature 10.0 1440 > th dose independent rect. 24 7
477 146.97 temperature 30.0 1440 < th dose independent rect. 24 7
481 146.97 humidity 50.0 1440 > th dose independent rect. 24 7
486 146.97 atmosphere 995.0 1440 > th dose independent rect. 24 7
487 146.97 radiation 40.0 1440 < th dose independent rect. 24 7
491 146.97 temperature 10.0 1440 > th dose independent rect. 7 17
494 146.98 precipitation 0.1 270 < th dose independent rect. 8 19
495 146.98 radiation 1.0 90 < th dose dependent sin 10 NA
497 146.98 precipitation 0.1 270 < th dose dependent rect. 8 19
503 147.03 temperature 10.0 270 > th dose independent rect. 4 3
505 147.03 temperature 30.0 270 < th dose independent rect. 4 3
506 147.03 humidity 50.0 270 > th dose independent rect. 4 3
508 147.03 atmosphere 995.0 270 > th dose independent rect. 4 3
509 147.03 atmosphere 1015.0 270 < th dose independent rect. 4 3
510 147.03 radiation 40.0 270 < th dose independent rect. 4 3
513 147.03 temperature 10.0 270 > th dose independent rect. 7 21
517 147.07 temperature 20.0 30 > th dose independent sin 8 NA
531 147.08 precipitation 0.1 30 < th dose independent rect. 23 7
534 147.08 precipitation 0.1 30 < th dose dependent rect. 23 7
542 147.13 radiation 40.0 270 < th dose dependent rect. 3 17
548 147.20 wind 9.0 270 < th dose independent rect. 7 10
572 147.53 wind 9.0 270 < th dose dependent rect. 4 3
580 147.56 radiation 40.0 270 < th dose dependent rect. 4 3
605 147.77 atmosphere 995.0 10 > th dose independent rect. 6 17
636 147.98 wind 7.0 270 < th dose independent rect. 3 5
641 148.02 temperature 25.0 270 < th dose independent rect. 3 16
645 148.04 radiation 20.0 270 < th dose independent rect. 15 16
654 148.10 radiation 40.0 270 < th dose independent rect. 3 18
664 148.19 temperature 10.0 270 > th dose independent rect. 3 5
666 148.19 temperature 30.0 270 < th dose independent rect. 3 5
667 148.19 humidity 50.0 270 > th dose independent rect. 3 5
669 148.19 atmosphere 995.0 270 > th dose independent rect. 3 5
670 148.19 atmosphere 1015.0 270 < th dose independent rect. 3 5
671 148.19 temperature 10.0 270 > th dose independent rect. 8 19
673 148.21 precipitation 0.1 270 < th dose independent rect. 3 5
674 148.21 precipitation 0.1 270 < th dose dependent rect. 3 5
694 148.34 radiation 40.0 270 < th dose independent rect. 12 10
705 148.46 atmosphere 995.0 30 > th dose dependent rect. 6 3
709 148.49 wind 1.0 10 > th dose independent rect. 6 3
738 148.65 temperature 30.0 30 < th dose dependent rect. 6 17
757 148.75 wind 9.0 30 < th dose independent rect. 6 17
767 148.85 temperature 25.0 90 > th dose dependent sin 2 NA
819 149.07 atmosphere 995.0 270 > th dose dependent rect. 4 3
842 149.24 atmosphere 1005.0 30 > th dose independent rect. 6 3
856 149.34 temperature 20.0 30 < th dose independent sin 8 NA
864 149.38 radiation 40.0 270 < th dose dependent rect. 15 16
894 149.50 atmosphere 1005.0 270 > th dose independent rect. 4 3
906 149.55 temperature 20.0 90 < th dose independent rect. 22 13
924 149.64 radiation 1.0 90 > th dose independent rect. 6 1
931 149.66 wind 1.0 270 > th dose independent rect. 8 19
933 149.67 precipitation 0.1 270 < th dose independent rect. 7 10
935 149.67 precipitation 0.1 270 < th dose dependent rect. 7 10
936 149.68 wind 1.0 30 > th dose independent rect. 23 7
954 149.78 atmosphere 1010.0 270 < th dose independent rect. 13 9
979 149.80 radiation 20.0 270 < th dose independent rect. 3 17
989 149.83 radiation 1.0 90 > th dose dependent rect. 6 1