Os03g0656800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-glucanase.
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Os03g0656800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-glucanase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.6 | 0.721 | 6.27 | -2.29 | 2.47 | 1.1 | -1.93 | 1.39 | -0.711 | 0.263 | 21.4 | 1304 | -- | -- |
| 237 | 0.717 | 6.3 | -2.65 | 2.47 | 1.15 | -1.84 | -- | -0.737 | 0.249 | 23.84 | 1353 | -- | -- |
| 250.81 | 0.738 | 6.27 | -2.33 | 2.52 | 1.1 | -- | 1.03 | -0.73 | 0.346 | 20.91 | 1389 | -- | -- |
| 251.64 | 0.739 | 6.31 | -2.61 | 2.51 | 1.1 | -- | -- | -0.763 | 0.347 | 23.62 | 1388 | -- | -- |
| 567.47 | 1.11 | 6.32 | -3.13 | -- | 2.78 | -- | -0.582 | -0.992 | -- | 17.53 | 950 | -- | -- |
| 284.24 | 0.79 | 6.26 | -2.28 | 2.61 | -- | -1.69 | -- | -0.557 | 0.376 | -- | -- | -- | -- |
| 296.38 | 0.806 | 6.25 | -2.21 | 2.62 | -- | -- | -- | -0.55 | 0.445 | -- | -- | -- | -- |
| 567.35 | 1.11 | 6.32 | -2.98 | -- | 2.79 | -- | -- | -1.02 | -- | 17.1 | 960 | -- | -- |
| 410.83 | 0.944 | 6.18 | -- | 2.57 | 0.512 | -- | -- | -0.174 | 0.442 | 30.2 | 1404 | -- | -- |
| 726.78 | 1.26 | 6.2 | -2.12 | -- | -- | -- | -- | -0.507 | -- | -- | -- | -- | -- |
| 425.62 | 0.965 | 6.2 | -- | 2.59 | -- | -- | -- | -0.303 | 0.402 | -- | -- | -- | -- |
| 746.98 | 1.28 | 6.11 | -- | -- | -1.96 | -- | -- | -0.0782 | -- | 23.9 | 1009 | -- | -- |
| 845.86 | 1.36 | 6.15 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.93 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 3 | 225.71 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 6 | 226.16 | temperature | 20.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 17 | 228.04 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 27 | 229.11 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 28 | 229.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 35 | 229.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 36 | 229.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 41 | 229.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 43 | 229.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 120 | 232.94 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 127 | 233.02 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 135 | 233.19 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 136 | 233.30 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 137 | 233.33 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 146 | 233.55 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 147 | 233.56 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 157 | 233.84 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 8 |
| 161 | 233.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 168 | 234.00 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 176 | 234.07 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 181 | 234.21 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 184 | 234.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 274 | 235.22 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 304 | 235.55 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 305 | 235.55 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 308 | 235.56 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 321 | 235.65 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 322 | 235.66 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 326 | 235.68 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 331 | 235.70 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 344 | 235.80 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 357 | 235.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 358 | 235.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 395 | 236.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 452 | 236.39 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 527 | 236.57 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 669 | 237.06 | temperature | 30.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 708 | 237.19 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 710 | 237.20 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 765 | 237.35 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 766 | 237.36 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 770 | 237.36 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 772 | 237.37 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 777 | 237.38 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 806 | 237.44 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 887 | 237.60 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 933 | 237.68 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 939 | 237.69 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 1 |