Os03g0655600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Herpesvirus glycoprotein H family protein.
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Os03g0655600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Herpesvirus glycoprotein H family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.35 | 0.309 | 9.54 | 2.2 | 0.368 | -1.12 | -0.491 | 3.45 | 0.414 | 0.897 | 21.86 | 1239 | -- | -- |
| 52.64 | 0.338 | 9.65 | 1.24 | 0.271 | -0.976 | -0.248 | -- | 0.186 | 23.6 | 20.43 | 1647 | -- | -- |
| 44.28 | 0.31 | 9.54 | 2.2 | 0.335 | -1.09 | -- | 3.31 | 0.408 | 0.871 | 21.97 | 1298 | -- | -- |
| 49.69 | 0.328 | 9.65 | 1.26 | 0.473 | -1.33 | -- | -- | 0.154 | 22.9 | 14.02 | 871 | -- | -- |
| 48.72 | 0.325 | 9.53 | 2.2 | -- | -1.02 | -- | 3.12 | 0.411 | -- | 21.6 | 1556 | -- | -- |
| 74.91 | 0.406 | 9.69 | 0.92 | 0.225 | -- | -0.309 | -- | -0.0555 | 0.721 | -- | -- | -- | -- |
| 75.31 | 0.406 | 9.69 | 0.931 | 0.226 | -- | -- | -- | -0.0536 | 0.494 | -- | -- | -- | -- |
| 55.16 | 0.346 | 9.64 | 1.32 | -- | -1.18 | -- | -- | 0.168 | -- | 12.35 | 1589 | -- | -- |
| 88.75 | 0.439 | 9.7 | -- | 0.374 | -0.797 | -- | -- | -0.0557 | 23.3 | 12.23 | 789 | -- | -- |
| 78.51 | 0.414 | 9.69 | 0.939 | -- | -- | -- | -- | -0.0498 | -- | -- | -- | -- | -- |
| 98.17 | 0.463 | 9.72 | -- | 0.24 | -- | -- | -- | -0.157 | 0.689 | -- | -- | -- | -- |
| 89.51 | 0.442 | 9.69 | -- | -- | -0.717 | -- | -- | -0.0538 | -- | 19.73 | 38 | -- | -- |
| 101.77 | 0.471 | 9.71 | -- | -- | -- | -- | -- | -0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 42.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 8 |
| 4 | 42.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 10 | 43.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 36 | 43.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 49 | 43.39 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 76 | 43.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 82 | 43.81 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 91 | 43.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 94 | 43.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 138 | 44.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 145 | 44.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 181 | 44.49 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 209 | 44.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 232 | 44.68 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 239 | 44.69 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 247 | 44.70 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 287 | 44.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 322 | 44.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 345 | 44.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 395 | 44.99 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 407 | 45.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 506 | 45.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 518 | 45.25 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 723 | 45.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 730 | 45.65 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 731 | 45.65 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 878 | 45.89 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 892 | 45.91 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 893 | 45.91 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 897 | 45.91 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 986 | 46.08 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |