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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0654900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ornithine decarboxylase (EC 4.1.1.17).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0431) R2 : 0.584
β1 : -3.7 (0.158) R2dD : 0.521 R2D : 0.362
β2 : 0.509 (0.102) R2dC : 0.0226 R2C : -0.0275
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.17 (0.092) R2dN8 : 0.197 R2N8 : 0.0438
σ : 0.811
deviance : 299.8
__
_____
C
peak time of C : 0.278
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274.25 0.778 4.61 -3.91 0.477 -1.05 -0.859 2.95 -1.23 23.9 1012 674 -- --
279.38 0.778 4.6 -3.81 0.516 -1.48 -0.797 -- -1.21 23.9 1012 713 -- --
277.23 0.775 4.61 -3.88 0.473 -1.03 -- 2.95 -1.23 0.288 1012 718 -- --
281.81 0.782 4.6 -3.8 0.493 -1.59 -- -- -1.22 0.263 1013 768 -- --
291.28 0.795 4.6 -3.89 -- -0.937 -- 3.05 -1.23 -- 1012 784 -- --
295.02 0.805 4.59 -3.74 0.502 -- -1.06 -- -1.17 23.9 -- -- -- --
299.8 0.811 4.59 -3.7 0.509 -- -- -- -1.17 0.278 -- -- -- --
296.49 0.802 4.59 -3.81 -- -2.04 -- -- -1.22 -- 1013 911 -- --
657.28 1.2 4.5 -- 0.493 -1.03 -- -- -0.769 23.9 1014 567 -- --
316.07 0.831 4.58 -3.69 -- -- -- -- -1.16 -- -- -- -- --
661.4 1.2 4.49 -- 0.459 -- -- -- -0.757 23.8 -- -- -- --
671.87 1.21 4.49 -- -- -0.718 -- -- -0.766 -- 1014 738 -- --
674.69 1.21 4.48 -- -- -- -- -- -0.753 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.28 atmosphere 1015 270 < th dose dependent rect. 13 9
2 261.93 atmosphere 1015 270 < th dose dependent rect. 11 10
7 262.65 atmosphere 995 270 > th dose dependent rect. 9 14
9 263.11 atmosphere 995 270 > th dose dependent rect. 9 17
10 263.28 atmosphere 995 10 > th dose dependent rect. 11 15
13 263.53 atmosphere 1010 90 < th dose dependent rect. 15 8
24 264.65 atmosphere 1000 90 > th dose dependent rect. 2 7
25 264.68 atmosphere 1000 10 > th dose dependent rect. 2 9
26 264.73 atmosphere 1005 90 > th dose dependent rect. 11 12
41 265.59 atmosphere 1000 270 > th dose dependent rect. 24 8
82 267.03 atmosphere 1005 90 > th dose independent rect. 6 3
91 267.28 atmosphere 995 90 > th dose dependent rect. 9 21
114 267.73 atmosphere 1015 90 < th dose dependent sin 18 NA
120 267.82 atmosphere 1015 270 < th dose dependent sin 20 NA
121 267.83 atmosphere 1005 270 > th dose independent rect. 4 3
137 268.11 atmosphere 1005 10 > th dose independent rect. 2 9
141 268.17 atmosphere 1000 270 > th dose dependent rect. 4 3
164 268.42 atmosphere 995 90 > th dose dependent sin 18 NA
170 268.49 atmosphere 1010 10 < th dose dependent rect. 12 10
184 268.64 atmosphere 995 270 > th dose dependent sin 20 NA
196 268.77 atmosphere 1005 90 > th dose independent rect. 2 7
205 268.89 atmosphere 1005 30 > th dose dependent sin 18 NA
239 269.25 atmosphere 995 90 > th dose dependent rect. 9 8
272 269.56 atmosphere 1005 90 > th dose dependent rect. 6 3
336 270.14 atmosphere 1005 720 > th dose dependent rect. 9 6
342 270.20 atmosphere 1015 90 < th dose independent rect. 15 18
347 270.26 atmosphere 995 270 > th dose dependent rect. 9 4
374 270.57 atmosphere 1015 90 < th dose independent rect. 17 16
384 270.67 atmosphere 1005 270 < th dose dependent rect. 17 2
395 270.79 temperature 15 270 > th dose independent rect. 4 15
396 270.79 atmosphere 1015 270 < th dose independent rect. 13 20
423 271.06 temperature 20 30 > th dose dependent rect. 2 7
433 271.15 atmosphere 1015 720 < th dose independent rect. 19 23
450 271.28 temperature 10 30 > th dose dependent rect. 17 16
457 271.33 atmosphere 1005 720 > th dose dependent rect. 11 2
458 271.33 atmosphere 1000 10 > th dose dependent rect. 4 7
500 271.62 humidity 60 4320 < th dose independent sin 14 NA
506 271.65 temperature 10 90 > th dose dependent rect. 15 18
516 271.75 atmosphere 1005 90 > th dose independent rect. 10 13
536 271.90 humidity 60 4320 < th dose independent rect. 12 1
550 271.99 temperature 10 270 > th dose dependent rect. 13 20
564 272.10 humidity 60 4320 > th dose independent sin 14 NA
578 272.19 atmosphere 1015 720 < th dose independent rect. 10 23
579 272.20 atmosphere 1000 30 > th dose dependent rect. 11 6
582 272.22 humidity 60 4320 < th dose independent rect. 15 5
604 272.28 atmosphere 1015 720 < th dose independent rect. 19 14
622 272.37 humidity 60 4320 > th dose independent rect. 15 9
623 272.37 humidity 70 4320 < th dose dependent rect. 16 4
636 272.38 humidity 60 4320 > th dose independent rect. 15 6
640 272.40 humidity 60 4320 > th dose independent rect. 15 12
643 272.40 humidity 60 4320 > th dose independent rect. 15 16
660 272.51 atmosphere 1005 90 > th dose independent rect. 10 15
664 272.55 humidity 60 4320 < th dose independent rect. 12 8
680 272.58 humidity 60 4320 > th dose independent rect. 12 1
702 272.64 atmosphere 995 1440 > th dose independent rect. 10 6
752 272.82 atmosphere 1015 720 < th dose independent rect. 12 15
797 272.92 atmosphere 1015 30 < th dose dependent rect. 6 16
800 272.94 atmosphere 1015 720 < th dose independent rect. 17 16
801 272.94 humidity 50 14400 > th dose dependent rect. 2 2
816 273.02 humidity 90 30 < th dose independent rect. 6 3
818 273.02 atmosphere 1005 90 < th dose independent rect. 13 9
833 273.10 humidity 60 4320 > th dose independent rect. 12 11
836 273.11 humidity 60 4320 > th dose independent rect. 12 8
839 273.11 humidity 60 4320 > th dose independent rect. 12 15
842 273.11 humidity 60 4320 > th dose independent rect. 12 19
851 273.14 atmosphere 1015 720 < th dose independent rect. 21 10
857 273.16 temperature 10 30 > th dose dependent rect. 6 16
858 273.18 temperature 20 30 > th dose dependent rect. 6 3
861 273.19 atmosphere 1015 720 < th dose independent rect. 21 21
864 273.20 temperature 20 30 > th dose independent rect. 6 3
865 273.20 atmosphere 1015 720 < th dose independent rect. 21 17
887 273.24 atmosphere 1005 90 < th dose independent rect. 15 7
897 273.26 wind 1 90 > th dose dependent rect. 9 6
906 273.32 humidity 90 90 < th dose independent rect. 4 5
944 273.39 atmosphere 1015 720 < th dose independent rect. 21 8
961 273.43 radiation 1 270 < th dose dependent rect. 18 17
968 273.45 atmosphere 1015 720 < th dose independent rect. 19 8
998 273.51 wind 1 270 > th dose independent rect. 13 19