Os03g0654800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0654800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.1 | 0.305 | 11.4 | -1.73 | 0.663 | 1.42 | -0.585 | -1.46 | -0.524 | 23.8 | 10.19 | 785 | -- | -- |
| 43.26 | 0.306 | 11.3 | -1.48 | 0.666 | 1.37 | -0.869 | -- | -0.456 | 23.1 | 9.242 | 924 | -- | -- |
| 43.51 | 0.307 | 11.4 | -1.72 | 0.678 | 1.42 | -- | -1.58 | -0.517 | 23.8 | 11.34 | 778 | -- | -- |
| 46.46 | 0.317 | 11.3 | -1.44 | 0.666 | 1.37 | -- | -- | -0.45 | 23.3 | 9.021 | 895 | -- | -- |
| 67.37 | 0.382 | 11.4 | -1.91 | -- | 1.88 | -- | -1.88 | -0.612 | -- | 8.913 | 852 | -- | -- |
| 69.5 | 0.391 | 11.3 | -1.1 | 0.918 | -- | -0.795 | -- | -0.234 | 23 | -- | -- | -- | -- |
| 72.17 | 0.398 | 11.3 | -1.07 | 0.921 | -- | -- | -- | -0.232 | 23 | -- | -- | -- | -- |
| 70.29 | 0.39 | 11.3 | -1.55 | -- | 1.85 | -- | -- | -0.518 | -- | 12.8 | 858 | -- | -- |
| 92.88 | 0.449 | 11.3 | -- | 0.822 | 0.658 | -- | -- | -0.212 | 23.9 | 21 | 520 | -- | -- |
| 125.03 | 0.522 | 11.3 | -1.05 | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
| 102.45 | 0.473 | 11.3 | -- | 0.912 | -- | -- | -- | -0.112 | 22.9 | -- | -- | -- | -- |
| 124.02 | 0.519 | 11.3 | -- | -- | 0.994 | -- | -- | -0.254 | -- | 21.9 | 852 | -- | -- |
| 154.17 | 0.58 | 11.2 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 3 | 40.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 14 | 41.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 17 | 41.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 37 | 41.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 67 | 42.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 72 | 42.18 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 76 | 42.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 100 | 42.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 202 | 42.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 249 | 42.83 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 509 | 43.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 529 | 43.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 609 | 43.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 634 | 43.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 717 | 43.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 791 | 43.84 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 827 | 43.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 981 | 44.07 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |