Os03g0654500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0654500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.03 | 0.21 | 10.8 | 0.975 | 0.669 | -0.444 | 0.583 | 0.165 | 0.517 | 18.3 | 95 | 1152 | -- | -- |
| 20.07 | 0.209 | 10.8 | 0.968 | 0.672 | -0.436 | 0.578 | -- | 0.52 | 18.3 | 95 | 1150 | -- | -- |
| 20.84 | 0.213 | 10.8 | 0.968 | 0.665 | -0.417 | -- | 0.151 | 0.518 | 18.1 | 117 | 1196 | -- | -- |
| 20.85 | 0.213 | 10.8 | 0.95 | 0.665 | -0.393 | -- | -- | 0.512 | 18.1 | 94 | 1223 | -- | -- |
| 42.8 | 0.305 | 10.8 | 0.949 | -- | -0.495 | -- | 0.107 | 0.508 | -- | 118.1 | 1293 | -- | -- |
| 23.2 | 0.226 | 10.8 | 0.931 | 0.681 | -- | 0.507 | -- | 0.501 | 17.7 | -- | -- | -- | -- |
| 23.82 | 0.229 | 10.8 | 0.928 | 0.684 | -- | -- | -- | 0.503 | 17.6 | -- | -- | -- | -- |
| 42.82 | 0.305 | 10.8 | 0.939 | -- | -0.485 | -- | -- | 0.506 | -- | 133.5 | 1294 | -- | -- |
| 29.27 | 0.252 | 10.8 | -- | 0.678 | -0.82 | -- | -- | 0.316 | 17.6 | 68 | 47520 | -- | -- |
| 48.12 | 0.324 | 10.8 | 0.906 | -- | -- | -- | -- | 0.486 | -- | -- | -- | -- | -- |
| 46.52 | 0.319 | 10.8 | -- | 0.669 | -- | -- | -- | 0.399 | 17.7 | -- | -- | -- | -- |
| 53.11 | 0.339 | 10.8 | -- | -- | -0.808 | -- | -- | 0.307 | -- | 68.84 | 47520 | -- | -- |
| 69.78 | 0.39 | 10.8 | -- | -- | -- | -- | -- | 0.386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.79 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 19.86 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 3 | 19.91 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 4 | 19.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 9 | 19.96 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 12 | 19.99 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 23 | 20.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 26 | 20.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 39 | 20.14 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 41 | 20.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 45 | 20.17 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 48 | 20.17 | humidity | 50 | 720 | > th | dose dependent | sin | 11 | NA |
| 56 | 20.20 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 15 |
| 58 | 20.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 60 | 20.20 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 67 | 20.21 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 9 |
| 70 | 20.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 74 | 20.22 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 85 | 20.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 95 | 20.24 | humidity | 50 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 100 | 20.25 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 123 | 20.27 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 141 | 20.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 144 | 20.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 157 | 20.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 162 | 20.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 167 | 20.29 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 173 | 20.30 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 182 | 20.30 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 208 | 20.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 210 | 20.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 212 | 20.31 | humidity | 90 | 1440 | < th | dose dependent | sin | 12 | NA |
| 215 | 20.31 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 301 | 20.34 | wind | 3 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 399 | 20.38 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 482 | 20.41 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 532 | 20.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 534 | 20.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 576 | 20.44 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 602 | 20.45 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 6 |
| 603 | 20.45 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 14 |
| 614 | 20.45 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 633 | 20.45 | humidity | 50 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 636 | 20.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 638 | 20.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 639 | 20.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 673 | 20.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 675 | 20.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 705 | 20.47 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 760 | 20.49 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 782 | 20.49 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 813 | 20.49 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 827 | 20.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 834 | 20.50 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 858 | 20.50 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 913 | 20.52 | humidity | 80 | 720 | > th | dose independent | sin | 11 | NA |
| 914 | 20.52 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 917 | 20.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 970 | 20.53 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 13 |