Os03g0654400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cationic amino acid transporter-like protein.
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Os03g0654400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cationic amino acid transporter-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.91 | 0.45 | 9.54 | -2.42 | 0.916 | 1.13 | -1.45 | -5.77 | -0.167 | 6.59 | 21.81 | 4590 | -- | -- |
| 110.84 | 0.49 | 9.34 | -0.976 | 0.898 | 1.12 | -1.53 | -- | 0.155 | 6.7 | 14.41 | 6865 | -- | -- |
| 96.46 | 0.457 | 9.54 | -2.46 | 0.908 | 1.13 | -- | -5.89 | -0.171 | 6.2 | 21.81 | 4494 | -- | -- |
| 115.22 | 0.5 | 9.33 | -0.959 | 0.922 | 1.1 | -- | -- | 0.217 | 6.23 | 14.4 | 4822 | -- | -- |
| 138.32 | 0.548 | 9.55 | -2.37 | -- | 1.15 | -- | -5.51 | -0.143 | -- | 21.47 | 4342 | -- | -- |
| 133.78 | 0.542 | 9.28 | -0.398 | 0.907 | -- | -1.46 | -- | 0.437 | 6.54 | -- | -- | -- | -- |
| 138.33 | 0.551 | 9.28 | -0.423 | 0.912 | -- | -- | -- | 0.44 | 6.08 | -- | -- | -- | -- |
| 155.27 | 0.58 | 9.35 | -0.938 | -- | 1.17 | -- | -- | 0.223 | -- | 14.5 | 4237 | -- | -- |
| 131.2 | 0.533 | 9.3 | -- | 0.959 | 0.68 | -- | -- | 0.368 | 6.29 | 17.33 | 2005 | -- | -- |
| 181.42 | 0.629 | 9.3 | -0.397 | -- | -- | -- | -- | 0.46 | -- | -- | -- | -- | -- |
| 143.06 | 0.559 | 9.27 | -- | 0.906 | -- | -- | -- | 0.487 | 6.1 | -- | -- | -- | -- |
| 170.4 | 0.608 | 9.31 | -- | -- | 0.879 | -- | -- | 0.376 | -- | 8.428 | 1325 | -- | -- |
| 185.58 | 0.636 | 9.29 | -- | -- | -- | -- | -- | 0.505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.98 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 84.34 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 3 | 84.38 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 4 | 84.94 | wind | 7 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 5 | 84.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 7 | 85.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 13 | 85.24 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 18 | 85.35 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 20 | 85.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 24 | 85.49 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 30 | 85.59 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 41 | 85.78 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 52 | 85.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 53 | 85.79 | humidity | 90 | 43200 | > th | dose independent | sin | 2 | NA |
| 61 | 85.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 64 | 85.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 66 | 85.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 67 | 85.90 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 69 | 85.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 78 | 85.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 128 | 86.21 | humidity | 90 | 43200 | < th | dose independent | sin | 2 | NA |
| 169 | 86.49 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 8 |
| 194 | 86.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 205 | 86.70 | humidity | 90 | 43200 | < th | dose independent | sin | 19 | NA |
| 215 | 86.75 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 222 | 86.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 240 | 86.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 304 | 87.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 306 | 87.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 325 | 87.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 337 | 87.25 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 355 | 87.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 357 | 87.34 | humidity | 90 | 43200 | > th | dose independent | sin | 20 | NA |
| 364 | 87.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 375 | 87.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 379 | 87.41 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 387 | 87.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 390 | 87.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 415 | 87.55 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 470 | 87.70 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 15 |
| 475 | 87.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 518 | 87.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 523 | 87.88 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 554 | 87.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 559 | 87.96 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 565 | 87.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 569 | 88.00 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 570 | 88.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 605 | 88.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 613 | 88.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 631 | 88.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 634 | 88.13 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 660 | 88.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 688 | 88.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 758 | 88.28 | radiation | 1 | 43200 | < th | dose independent | sin | 6 | NA |
| 763 | 88.29 | radiation | 1 | 43200 | > th | dose independent | sin | 6 | NA |
| 793 | 88.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 816 | 88.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 828 | 88.36 | radiation | 1 | 43200 | < th | dose dependent | sin | 10 | NA |
| 856 | 88.38 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 900 | 88.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 923 | 88.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 926 | 88.46 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 928 | 88.46 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 987 | 88.56 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 10 |