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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0653900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosome-inactivating protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0229) R2 : 0.0164
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.133 (0.0482) R2dN8 : 0.0212 R2N8 : 0.0164
σ : 0.431
deviance : 85.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.21 0.418 3.24 0.00236 0.378 -0.265 -0.468 -0.0858 0.0732 4.72 90.09 103 -- --
79.21 0.415 3.24 -0.000208 0.378 -0.272 -0.508 -- 0.0727 4.72 90.25 110 -- --
79.66 0.416 3.24 0.00351 0.394 -0.284 -- -0.178 0.0768 4.76 90.01 128 -- --
79.84 0.416 3.24 0.0109 0.394 -0.309 -- -- 0.0716 4.9 90.44 129 -- --
82.98 0.424 3.22 -0.016 -- 0.196 -- -0.616 0.15 -- 69 261 -- --
80.86 0.422 3.23 -0.0274 0.253 -- -0.674 -- 0.121 4.73 -- -- -- --
81.95 0.424 3.23 -0.0235 0.255 -- -- -- 0.125 5.33 -- -- -- --
83.66 0.426 3.23 -0.0248 -- 0.192 -- -- 0.144 -- 67.22 316 -- --
79.84 0.416 3.24 -- 0.393 -0.308 -- -- 0.0699 4.92 90.5 129 -- --
85.33 0.432 3.23 -0.0148 -- -- -- -- 0.131 -- -- -- -- --
81.96 0.424 3.23 -- 0.254 -- -- -- 0.128 5.33 -- -- -- --
83.68 0.426 3.23 -- -- 0.192 -- -- 0.147 -- 67 316 -- --
85.34 0.431 3.23 -- -- -- -- -- 0.133 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.60 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 69.84 radiation 1.0 14400 < th dose dependent rect. 3 1
17 70.09 wind 9.0 1440 < th dose independent rect. 3 1
18 70.09 temperature 10.0 1440 > th dose independent rect. 3 1
21 70.09 temperature 30.0 1440 < th dose independent rect. 3 1
25 70.09 humidity 50.0 1440 > th dose independent rect. 3 1
34 70.09 atmosphere 995.0 1440 > th dose independent rect. 3 1
35 70.09 radiation 1.0 1440 < th dose independent rect. 3 1
55 70.09 temperature 10.0 1440 > th dose independent rect. 4 23
66 70.18 temperature 20.0 30 > th dose dependent rect. 2 1
69 70.25 wind 3.0 30 < th dose dependent rect. 2 1
70 70.29 atmosphere 1005.0 30 > th dose independent rect. 2 1
71 70.31 temperature 20.0 30 > th dose independent rect. 2 1
76 70.36 wind 3.0 30 < th dose independent rect. 2 1
85 70.46 humidity 80.0 30 > th dose independent rect. 2 1
86 70.49 humidity 70.0 30 > th dose dependent rect. 2 1
88 70.50 humidity 50.0 30 > th dose dependent rect. 2 1
92 70.51 temperature 10.0 30 > th dose independent rect. 2 1
94 70.51 temperature 30.0 30 < th dose independent rect. 2 1
95 70.51 humidity 50.0 30 > th dose independent rect. 2 1
99 70.51 atmosphere 1010.0 30 < th dose independent rect. 2 1
101 70.51 radiation 1.0 30 < th dose independent rect. 2 1
106 70.51 precipitation 0.1 30 < th dose independent rect. 2 1
107 70.51 temperature 10.0 30 > th dose independent rect. 3 23
108 70.51 radiation 1.0 30 < th dose dependent rect. 2 1
113 70.51 precipitation 0.1 30 < th dose dependent rect. 2 1
118 70.80 atmosphere 1015.0 30 < th dose dependent rect. 2 1
123 70.98 temperature 30.0 30 < th dose dependent rect. 2 1
124 71.04 humidity 90.0 90 < th dose independent rect. 2 1
133 71.20 wind 1.0 30 > th dose independent rect. 2 1
134 71.20 atmosphere 1000.0 30 > th dose independent rect. 3 23
148 71.59 wind 9.0 30 < th dose independent rect. 3 23
154 71.68 precipitation 0.1 30 < th dose independent rect. 3 23
155 71.68 precipitation 0.1 30 < th dose dependent rect. 3 23
246 73.75 humidity 50.0 30 > th dose independent rect. 3 23
277 75.04 wind 9.0 720 < th dose independent rect. 3 8
282 75.11 temperature 10.0 720 > th dose independent rect. 15 8
283 75.11 temperature 10.0 720 > th dose independent rect. 23 16
312 75.26 temperature 10.0 720 > th dose independent rect. 3 8
313 75.26 atmosphere 995.0 720 > th dose independent rect. 3 8
314 75.26 temperature 10.0 720 > th dose independent rect. 11 16
316 75.27 atmosphere 995.0 720 > th dose independent rect. 23 16
318 75.28 radiation 10.0 10 < th dose dependent rect. 4 22
319 75.30 atmosphere 1000.0 30 > th dose dependent rect. 2 6
323 75.32 humidity 50.0 720 > th dose independent rect. 3 8
356 75.47 precipitation 0.1 720 < th dose independent rect. 15 8
357 75.47 precipitation 0.1 720 < th dose dependent rect. 15 8
360 75.58 temperature 10.0 30 > th dose dependent rect. 3 23
369 75.72 humidity 90.0 90 < th dose independent rect. 1 7
371 75.74 precipitation 0.1 720 < th dose independent rect. 3 8
373 75.74 precipitation 0.1 720 < th dose dependent rect. 3 8
375 75.76 precipitation 0.1 720 < th dose independent rect. 23 16
376 75.76 precipitation 0.1 720 < th dose dependent rect. 23 16
379 75.79 atmosphere 1015.0 720 < th dose independent rect. 3 8
416 75.87 temperature 30.0 30 < th dose independent rect. 3 23
443 76.30 precipitation 0.1 720 < th dose independent rect. 11 16
445 76.30 precipitation 0.1 720 < th dose dependent rect. 11 16
446 76.31 atmosphere 995.0 720 > th dose independent rect. 15 8
455 76.38 wind 5.0 30 < th dose dependent rect. 2 6
456 76.39 atmosphere 1005.0 30 > th dose independent rect. 2 6
457 76.40 humidity 50.0 720 > th dose independent rect. 23 16
463 76.42 wind 9.0 30 < th dose dependent rect. 3 23
470 76.50 temperature 25.0 270 > th dose independent rect. 23 4
474 76.51 atmosphere 995.0 720 > th dose independent rect. 11 16
479 76.54 wind 9.0 720 < th dose independent rect. 19 8
484 76.56 temperature 10.0 30 > th dose dependent rect. 8 18
487 76.59 precipitation 0.1 720 < th dose independent rect. 7 8
489 76.59 precipitation 0.1 720 < th dose dependent rect. 7 8
508 76.77 wind 9.0 720 < th dose independent rect. 15 8
511 76.78 atmosphere 995.0 720 > th dose independent rect. 7 8
546 76.81 radiation 10.0 30 < th dose independent rect. 4 22
547 76.82 wind 5.0 30 < th dose independent rect. 2 6
554 76.87 temperature 10.0 720 > th dose independent rect. 7 8
555 76.87 atmosphere 1015.0 720 < th dose independent rect. 7 8
556 76.87 temperature 10.0 720 > th dose independent rect. 15 16
559 76.89 radiation 10.0 10 < th dose independent rect. 14 12
561 76.91 atmosphere 995.0 720 > th dose independent rect. 15 16
562 76.91 atmosphere 1015.0 30 < th dose independent rect. 3 23
575 76.99 radiation 10.0 30 > th dose independent rect. 7 1
585 77.02 temperature 10.0 720 > th dose independent rect. 19 8
586 77.02 temperature 30.0 720 < th dose independent rect. 19 8
587 77.02 humidity 50.0 720 > th dose independent rect. 19 8
588 77.02 atmosphere 995.0 720 > th dose independent rect. 19 8
589 77.02 radiation 1.0 720 < th dose independent rect. 19 8
594 77.02 temperature 10.0 720 > th dose independent rect. 3 16
596 77.02 radiation 1.0 720 < th dose dependent rect. 19 8
625 77.06 atmosphere 995.0 720 > th dose independent rect. 3 16
648 77.07 temperature 25.0 270 > th dose dependent rect. 23 7
670 77.10 precipitation 0.1 720 < th dose independent rect. 19 8
677 77.10 precipitation 0.1 720 < th dose dependent rect. 19 8
688 77.14 radiation 40.0 10 < th dose dependent rect. 14 12
700 77.20 atmosphere 1000.0 30 > th dose independent rect. 8 18
723 77.21 radiation 20.0 10 < th dose dependent rect. 14 12
728 77.24 radiation 20.0 10 < th dose dependent rect. 16 10
731 77.26 precipitation 0.1 720 < th dose independent rect. 3 16
735 77.26 precipitation 0.1 720 < th dose dependent rect. 3 16
741 77.28 wind 1.0 10 < th dose independent rect. 11 16
748 77.30 wind 9.0 10 < th dose independent rect. 16 10
758 77.32 precipitation 0.1 10 < th dose independent rect. 2 14
759 77.32 precipitation 0.1 10 < th dose dependent rect. 2 14
762 77.33 radiation 10.0 10 < th dose independent rect. 10 16
765 77.34 temperature 20.0 10 < th dose independent rect. 4 1
777 77.35 temperature 10.0 30 > th dose dependent rect. 2 6
780 77.36 radiation 40.0 720 < th dose independent rect. 15 8
787 77.38 wind 1.0 720 > th dose independent rect. 15 8
788 77.38 temperature 10.0 1440 > th dose independent rect. 17 10
791 77.38 atmosphere 995.0 10 > th dose independent rect. 16 10
793 77.38 radiation 30.0 1440 < th dose independent rect. 17 10
799 77.38 temperature 10.0 1440 > th dose independent rect. 3 14
815 77.40 wind 9.0 720 < th dose independent rect. 23 16
818 77.41 wind 1.0 10 < th dose independent rect. 17 10
821 77.41 wind 9.0 30 < th dose independent rect. 8 18
823 77.41 wind 9.0 720 < th dose dependent rect. 2 1
832 77.42 humidity 50.0 30 > th dose independent rect. 16 10
837 77.43 precipitation 0.1 30 < th dose independent rect. 2 6
838 77.43 temperature 10.0 10 > th dose independent rect. 16 10
843 77.43 temperature 10.0 10 > th dose independent rect. 2 14
847 77.43 atmosphere 1015.0 10 < th dose independent rect. 2 14
849 77.43 temperature 15.0 30 > th dose independent rect. 8 18
851 77.43 wind 1.0 10 < th dose independent rect. 6 21
854 77.43 precipitation 0.1 30 < th dose dependent rect. 2 6
856 77.44 atmosphere 1015.0 720 < th dose independent rect. 3 16
861 77.45 temperature 25.0 30 > th dose dependent rect. 22 1
862 77.46 wind 9.0 1440 < th dose independent rect. 3 6
863 77.46 temperature 10.0 1440 > th dose independent rect. 3 6
866 77.46 humidity 50.0 1440 > th dose independent rect. 3 6
868 77.46 atmosphere 995.0 1440 > th dose independent rect. 3 6
869 77.46 precipitation 0.1 30 < th dose independent rect. 16 10
870 77.46 temperature 10.0 1440 > th dose independent rect. 9 18
873 77.46 precipitation 0.1 30 < th dose dependent rect. 16 10
876 77.47 humidity 90.0 30 < th dose independent rect. 22 1
882 77.49 wind 9.0 1440 < th dose independent rect. 23 1
883 77.49 temperature 10.0 1440 > th dose independent rect. 23 1
886 77.49 temperature 30.0 1440 < th dose independent rect. 23 1
890 77.49 humidity 50.0 1440 > th dose independent rect. 23 1
900 77.49 atmosphere 995.0 1440 > th dose independent rect. 23 1
901 77.49 radiation 1.0 1440 < th dose independent rect. 23 1
923 77.49 temperature 10.0 1440 > th dose independent rect. 24 23
926 77.49 humidity 90.0 30 < th dose dependent rect. 22 1
927 77.49 radiation 1.0 1440 < th dose dependent rect. 23 1
936 77.50 temperature 10.0 30 > th dose independent rect. 2 6
938 77.50 temperature 30.0 30 < th dose independent rect. 2 6
939 77.50 humidity 50.0 30 > th dose independent rect. 2 6
941 77.50 atmosphere 995.0 30 > th dose independent rect. 2 6
942 77.50 atmosphere 1015.0 30 < th dose independent rect. 2 6
945 77.50 humidity 50.0 30 > th dose independent rect. 2 14
951 77.51 atmosphere 995.0 10 > th dose independent rect. 2 14
956 77.52 precipitation 0.1 30 < th dose independent rect. 8 18
958 77.52 precipitation 0.1 30 < th dose dependent rect. 8 18
959 77.53 temperature 25.0 30 > th dose independent rect. 22 1
962 77.53 humidity 50.0 720 > th dose independent rect. 7 8
969 77.54 radiation 10.0 10 < th dose dependent rect. 7 19
973 77.55 radiation 10.0 10 < th dose dependent rect. 10 16
974 77.56 atmosphere 1005.0 30 > th dose independent rect. 22 1
975 77.56 atmosphere 1005.0 30 > th dose dependent rect. 22 1
985 77.57 temperature 25.0 720 > th dose dependent rect. 3 6