Os03g0651900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0651900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.88 | 0.435 | 11.6 | -0.375 | 1.44 | -1.21 | -0.305 | 2.66 | -0.342 | 4.72 | 92.92 | 300 | -- | -- |
| 90.99 | 0.444 | 11.6 | -0.325 | 1.45 | -1.35 | 0.545 | -- | -0.323 | 4.85 | 93.51 | 312 | -- | -- |
| 85.86 | 0.432 | 11.6 | -0.371 | 1.44 | -1.34 | -- | 2.59 | -0.331 | 4.75 | 93.41 | 300 | -- | -- |
| 91.61 | 0.446 | 11.6 | -0.334 | 1.45 | -1.41 | -- | -- | -0.318 | 4.81 | 93.7 | 308 | -- | -- |
| 167.66 | 0.603 | 11.6 | -0.373 | -- | 0.172 | -- | 3.22 | -0.164 | -- | 93.64 | 140 | -- | -- |
| 106.53 | 0.484 | 11.6 | -0.384 | 1.17 | -- | 0.125 | -- | -0.197 | 4.54 | -- | -- | -- | -- |
| 106.57 | 0.483 | 11.6 | -0.385 | 1.17 | -- | -- | -- | -0.198 | 4.53 | -- | -- | -- | -- |
| 136.74 | 0.545 | 11.6 | -0.356 | -- | 1.07 | -- | -- | -0.14 | -- | 58.08 | 293 | -- | -- |
| 94.52 | 0.453 | 11.6 | -- | 1.45 | -1.4 | -- | -- | -0.299 | 4.78 | 93.56 | 302 | -- | -- |
| 179.32 | 0.626 | 11.6 | -0.34 | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
| 110.47 | 0.492 | 11.6 | -- | 1.16 | -- | -- | -- | -0.155 | 4.54 | -- | -- | -- | -- |
| 140.11 | 0.551 | 11.6 | -- | -- | 1.1 | -- | -- | -0.105 | -- | 57.74 | 297 | -- | -- |
| 182.36 | 0.63 | 11.6 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 84.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 86.23 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 4 | 87.63 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 6 | 87.86 | humidity | 90.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 9 | 87.99 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 10 | 88.01 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 14 | 88.10 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 21 | 88.34 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 26 | 88.49 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 27 | 88.49 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 31 | 88.50 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 44 | 88.61 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 47 | 88.64 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 56 | 88.67 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 20 |
| 90 | 88.93 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 112 | 89.10 | humidity | 90.0 | 30 | > th | dose dependent | sin | 7 | NA |
| 146 | 89.41 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 151 | 89.43 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 201 | 89.65 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 208 | 89.66 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 255 | 89.89 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 269 | 89.93 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 274 | 89.95 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 310 | 90.18 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 381 | 90.41 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 489 | 90.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 491 | 90.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 498 | 90.90 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 506 | 90.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 507 | 90.94 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 527 | 91.02 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 547 | 91.08 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 11 | 22 |
| 570 | 91.17 | humidity | 90.0 | 30 | > th | dose dependent | no | NA | NA |
| 577 | 91.17 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 594 | 91.25 | humidity | 90.0 | 30 | > th | dose independent | sin | 6 | NA |
| 614 | 91.27 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 707 | 91.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 723 | 91.76 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 13 | 20 |
| 738 | 91.81 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 867 | 92.18 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 876 | 92.21 | wind | 1.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 878 | 92.23 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 879 | 92.23 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 16 |
| 883 | 92.25 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 12 |
| 897 | 92.31 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 16 |
| 947 | 92.42 | humidity | 90.0 | 10 | < th | dose independent | rect. | 18 | 20 |
| 980 | 92.50 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 18 |