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Os03g0651100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rhomboid-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0146) R2 : 0.636
β1 : 1.28 (0.0535) R2dD : 0.473 R2D : 0.372
β2 : 0.561 (0.0372) R2dC : 0.182 R2C : 0.141
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.29 (0.0312) R2dN8 : 0.0922 R2N8 : -0.0048
σ : 0.275
deviance : 34.43
__
_____
C
peak time of C : 16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.94 0.244 10.5 0.833 0.581 -0.47 0.0681 0.883 0.131 15.9 18.7 3892 -- --
27.53 0.244 10.5 0.862 0.583 -0.686 0.142 -- 0.176 15.9 18.4 6857 -- --
26.94 0.242 10.5 0.828 0.583 -0.49 -- 0.874 0.131 15.9 18.6 3879 -- --
27.33 0.243 10.5 0.891 0.599 -0.849 -- -- 0.183 15.9 17.6 6796 -- --
44.55 0.311 10.5 0.768 -- -0.422 -- 1.01 0.0986 -- 18.48 6301 -- --
34.35 0.275 10.5 1.28 0.559 -- 0.175 -- 0.289 16 -- -- -- --
34.43 0.275 10.5 1.28 0.561 -- -- -- 0.29 16 -- -- -- --
44.41 0.31 10.5 0.677 -- -0.82 -- -- 0.13 -- 14.11 38050 -- --
30.22 0.256 10.6 -- 0.548 -1.12 -- -- -0.102 15.7 16.74 47122 -- --
51.59 0.336 10.5 1.26 -- -- -- -- 0.275 -- -- -- -- --
77.52 0.412 10.5 -- 0.536 -- -- -- 0.147 16 -- -- -- --
46.7 0.318 10.5 -- -- -1.18 -- -- -0.0511 -- 16.7 38732 -- --
93.18 0.451 10.5 -- -- -- -- -- 0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.96 wind 3 43200 < th dose dependent rect. 20 1
2 26.20 wind 3 43200 < th dose dependent rect. 10 2
3 26.22 temperature 20 720 > th dose dependent sin 5 NA
4 26.24 wind 1 43200 > th dose independent rect. 24 1
6 26.27 wind 1 43200 < th dose dependent rect. 9 19
7 26.28 wind 1 43200 > th dose independent rect. 23 3
8 26.29 wind 3 43200 < th dose dependent rect. 18 6
11 26.30 wind 3 43200 < th dose dependent rect. 20 4
12 26.35 wind 3 43200 < th dose independent rect. 20 1
15 26.42 wind 1 43200 < th dose independent rect. 23 3
17 26.43 temperature 20 720 > th dose dependent rect. 1 13
18 26.43 temperature 20 720 > th dose dependent rect. 23 16
22 26.46 wind 3 43200 > th dose independent rect. 20 1
23 26.46 humidity 60 43200 > th dose independent rect. 19 1
24 26.46 humidity 70 43200 < th dose independent rect. 20 1
25 26.46 humidity 70 43200 < th dose dependent rect. 19 1
27 26.46 temperature 20 720 > th dose dependent rect. 3 11
30 26.47 wind 1 43200 < th dose dependent rect. 11 15
31 26.48 temperature 20 720 > th dose dependent rect. 4 9
38 26.51 humidity 60 43200 > th dose independent rect. 18 3
42 26.53 humidity 60 43200 < th dose independent rect. 18 3
59 26.57 humidity 70 43200 > th dose independent rect. 6 2
60 26.57 humidity 80 43200 > th dose independent rect. 20 4
63 26.57 humidity 50 43200 < th dose dependent rect. 16 1
77 26.59 humidity 60 43200 < th dose independent rect. 18 7
109 26.63 humidity 60 43200 < th dose dependent rect. 18 12
110 26.64 wind 3 43200 < th dose independent rect. 11 3
114 26.64 wind 1 43200 < th dose independent rect. 11 17
125 26.64 humidity 60 43200 < th dose dependent rect. 18 15
127 26.65 humidity 50 43200 < th dose independent rect. 15 2
128 26.65 humidity 50 43200 > th dose independent rect. 16 3
129 26.65 humidity 70 43200 < th dose independent rect. 19 15
130 26.65 humidity 50 43200 > th dose independent rect. 14 20
134 26.65 wind 9 43200 < th dose dependent rect. 14 10
135 26.65 wind 5 43200 < th dose dependent rect. 10 14
140 26.66 humidity 50 43200 < th dose independent rect. 15 4
179 26.67 humidity 60 43200 < th dose dependent sin 14 NA
186 26.67 wind 1 43200 > th dose dependent rect. 14 10
197 26.67 humidity 50 43200 < th dose dependent rect. 15 19
238 26.68 humidity 70 43200 < th dose dependent rect. 18 17
244 26.69 humidity 60 43200 < th dose independent rect. 8 2
256 26.69 humidity 50 43200 > th dose independent rect. 17 17
258 26.69 humidity 80 43200 < th dose dependent rect. 8 1
260 26.69 wind 9 43200 > th dose dependent rect. 19 4
308 26.70 wind 9 43200 < th dose dependent sin 18 NA
325 26.70 radiation 20 14400 > th dose dependent rect. 17 14
336 26.71 wind 1 43200 > th dose independent rect. 9 2
339 26.71 wind 3 43200 > th dose independent rect. 11 3
359 26.71 humidity 70 43200 > th dose independent rect. 19 15
421 26.72 humidity 50 43200 < th dose independent rect. 8 10
435 26.72 wind 1 43200 > th dose dependent sin 18 NA
473 26.73 wind 9 43200 > th dose independent rect. 19 4
474 26.73 humidity 70 43200 < th dose independent rect. 5 4
483 26.73 humidity 50 43200 > th dose independent rect. 8 10
504 26.73 humidity 50 43200 < th dose independent rect. 14 20
527 26.73 humidity 60 43200 < th dose dependent rect. 8 11
591 26.74 humidity 50 43200 > th dose independent sin 17 NA
595 26.74 humidity 50 43200 < th dose independent sin 18 NA
647 26.74 humidity 60 43200 < th dose dependent no NA NA
648 26.74 wind 3 43200 > th dose dependent rect. 15 1
650 26.74 radiation 20 14400 > th dose dependent rect. 6 1
761 26.75 wind 3 43200 > th dose independent rect. 10 5
764 26.75 wind 3 43200 > th dose independent rect. 9 7