Os03g0651000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glu-tRNAGln amidotransferase, C subunit family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0651000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Glu-tRNAGln amidotransferase, C subunit family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.95 | 0.415 | 11.2 | -0.563 | 1.36 | 1.77 | -0.393 | -0.799 | -0.562 | 22.1 | 22.57 | 237 | -- | -- |
| 78.3 | 0.412 | 11.2 | -0.42 | 1.38 | 1.69 | -0.36 | -- | -0.518 | 22.1 | 22.58 | 230 | -- | -- |
| 78.54 | 0.413 | 11.2 | -0.53 | 1.37 | 1.76 | -- | -0.703 | -0.556 | 22.1 | 22.56 | 230 | -- | -- |
| 78.81 | 0.413 | 11.2 | -0.403 | 1.39 | 1.69 | -- | -- | -0.515 | 22.1 | 22.65 | 219 | -- | -- |
| 148.43 | 0.567 | 11.2 | -0.699 | -- | 2.27 | -- | -0.567 | -0.682 | -- | 20.77 | 587 | -- | -- |
| 128.98 | 0.532 | 11.2 | -0.0578 | 1.64 | -- | -0.147 | -- | -0.26 | 20.4 | -- | -- | -- | -- |
| 129.05 | 0.532 | 11.2 | -0.0533 | 1.64 | -- | -- | -- | -0.26 | 20.3 | -- | -- | -- | -- |
| 149.41 | 0.569 | 11.2 | -0.603 | -- | 2.23 | -- | -- | -0.661 | -- | 20.67 | 588 | -- | -- |
| 82.71 | 0.424 | 11.2 | -- | 1.42 | 1.62 | -- | -- | -0.452 | 22 | 23.41 | 192 | -- | -- |
| 278.01 | 0.779 | 11.1 | -0.0631 | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
| 129.12 | 0.532 | 11.2 | -- | 1.64 | -- | -- | -- | -0.254 | 20.3 | -- | -- | -- | -- |
| 157.96 | 0.585 | 11.2 | -- | -- | 2.06 | -- | -- | -0.557 | -- | 21.57 | 574 | -- | -- |
| 278.12 | 0.778 | 11.1 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.38 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 4 | 70.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 5 | 70.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 10 | 71.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 26 | 72.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 28 | 72.41 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 30 | 72.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 52 | 73.62 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 101 | 74.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 110 | 75.19 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 112 | 75.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 133 | 75.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 151 | 76.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 276 | 77.91 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 17 |
| 439 | 79.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 524 | 80.39 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 573 | 80.69 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 10 |
| 644 | 81.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 674 | 81.30 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 679 | 81.31 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 767 | 81.70 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 879 | 82.45 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |