Os03g0650900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0650900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SPX, N-terminal domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.03	(0.0505)	R²	:	0.43
β₁	:	-1.28	(0.185)	R²_dD	:	0.0603	R²_D	:	0.0413
β₂	:	1.52	(0.134)	R²_dC	:	0.192	R²_C	:	0.268
β₃	:	1.46	(0.217)	R²_dE	:	0.0664	R²_E	:	0.139
β₄	:	-3.31	(0.503)	R²_dD*C	:	0.0551	R²_D*C	:	0.0388
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.066	(0.108)	R²_dN8	:	0.000454	R²_N8	:	-0.00221
σ	:	0.944
deviance	:	410.96
__

_____

C
peak time of C	:	2.53
E
wheather	:	radiation
threshold	:	1.07
memory length	:	75
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	3.75
open length of G	:	10.8

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
406.88	0.948	4.04	-1.31	1.52	1.44	-2.9	-2.47	-0.0427	2.39	1.291	71	3.6	11
410.96	0.944	4.03	-1.28	1.52	1.46	-3.31	--	-0.066	2.53	1.07	75	3.75	10.8
433.78	0.97	4.02	-1.33	1.48	1.41	--	-3.76	0.0299	2.44	1.524	52	3.62	10.5
449.48	0.987	4.03	-1.16	1.57	1.45	--	--	-0.0681	2.44	0.8677	69	3.85	10.7
544.22	1.09	4.02	-1.27	--	2.04	--	-3.73	0.0585	--	1.78	70	3.23	10.8
447.57	0.992	4.03	-1.22	1.91	--	-3.27	--	-0.0724	3.03	--	--	--	--
483.18	1.03	4.02	-1.15	1.9	--	--	--	-0.053	3.03	--	--	--	--
562.21	1.1	4	-1.15	--	2.02	--	--	0.075	--	1.808	80	3.28	11
485.74	1.03	4.02	--	1.59	1.5	--	--	-0.00635	2.63	0.6315	68	3.88	11
689.97	1.23	4.01	-1.07	--	--	--	--	-0.00368	--	--	--	--	--
518	1.06	3.99	--	1.88	--	--	--	0.075	3.03	--	--	--	--
596.9	1.14	3.97	--	--	1.99	--	--	0.199	--	1.876	86	3.25	11.1
720.08	1.25	3.99	--	--	--	--	--	0.115	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	411.21	radiation	1.0	90	< th	dose dependent	rect.	3	11
2	411.52	radiation	1.0	90	< th	dose independent	rect.	3	11
5	413.31	wind	1.0	90	> th	dose independent	rect.	3	3
6	414.10	radiation	1.0	90	< th	dose dependent	rect.	3	14
7	414.19	radiation	1.0	90	< th	dose independent	rect.	3	14
8	414.32	radiation	1.0	10	< th	dose dependent	rect.	4	10
23	416.44	radiation	1.0	90	< th	dose dependent	sin	2	NA
24	417.05	radiation	1.0	90	< th	dose independent	sin	2	NA
31	417.19	radiation	10.0	90	< th	dose dependent	rect.	3	5
37	417.43	wind	1.0	90	> th	dose independent	rect.	4	1
38	417.53	radiation	1.0	90	< th	dose dependent	rect.	3	16
39	417.54	radiation	1.0	90	> th	dose independent	sin	2	NA
55	418.69	radiation	1.0	10	< th	dose independent	rect.	13	1
65	418.69	radiation	1.0	10	< th	dose dependent	rect.	13	1
79	419.03	temperature	25.0	90	< th	dose independent	rect.	12	18
80	419.07	temperature	25.0	270	> th	dose independent	rect.	19	5
84	419.23	radiation	1.0	90	< th	dose independent	rect.	3	3
86	419.38	temperature	20.0	90	> th	dose dependent	rect.	20	7
88	419.45	temperature	25.0	270	> th	dose independent	rect.	18	7
100	419.86	wind	9.0	90	< th	dose independent	rect.	6	21
116	420.34	wind	5.0	90	< th	dose independent	rect.	3	3
120	420.36	humidity	80.0	90	> th	dose independent	rect.	12	1
132	420.51	humidity	80.0	90	> th	dose dependent	rect.	12	1
146	420.74	precipitation	0.1	90	< th	dose independent	rect.	6	21
147	420.74	precipitation	0.1	90	< th	dose dependent	rect.	6	21
161	421.00	wind	1.0	270	> th	dose independent	rect.	1	4
162	421.00	atmosphere	995.0	90	> th	dose independent	rect.	6	21
164	421.03	temperature	10.0	90	> th	dose independent	rect.	3	3
166	421.03	temperature	30.0	90	< th	dose independent	rect.	3	3
167	421.03	humidity	50.0	90	> th	dose independent	rect.	3	3
170	421.03	atmosphere	995.0	90	> th	dose independent	rect.	3	3
171	421.03	atmosphere	1010.0	90	< th	dose independent	rect.	3	3
173	421.03	radiation	20.0	90	< th	dose independent	rect.	3	3
176	421.03	temperature	10.0	90	> th	dose independent	rect.	6	21
178	421.08	precipitation	0.1	90	< th	dose independent	rect.	3	3
179	421.08	precipitation	0.1	90	< th	dose dependent	rect.	3	3
180	421.13	temperature	20.0	270	> th	dose dependent	rect.	19	5
183	421.17	radiation	1.0	270	< th	dose dependent	rect.	1	17
192	421.47	radiation	1.0	270	< th	dose dependent	rect.	1	5
201	421.68	wind	9.0	1440	< th	dose independent	rect.	4	4
202	421.68	temperature	10.0	1440	> th	dose independent	rect.	4	4
205	421.68	temperature	30.0	1440	< th	dose independent	rect.	4	4
209	421.68	humidity	50.0	1440	> th	dose independent	rect.	4	4
214	421.68	atmosphere	995.0	1440	> th	dose independent	rect.	4	4
215	421.68	atmosphere	1015.0	1440	< th	dose independent	rect.	4	4
217	421.68	temperature	10.0	1440	> th	dose independent	rect.	8	20
221	421.69	radiation	1.0	270	< th	dose independent	rect.	1	5
227	421.79	wind	7.0	270	< th	dose independent	rect.	1	4
239	421.94	wind	1.0	10	> th	dose independent	rect.	13	17
240	421.94	radiation	40.0	90	< th	dose dependent	rect.	12	18
241	421.97	radiation	1.0	270	< th	dose independent	rect.	1	17
258	421.99	radiation	40.0	1440	< th	dose independent	rect.	4	3
273	422.08	radiation	1.0	270	< th	dose dependent	rect.	1	13
277	422.11	temperature	10.0	270	> th	dose independent	rect.	1	4
279	422.11	temperature	30.0	270	< th	dose independent	rect.	1	4
280	422.11	humidity	50.0	270	> th	dose independent	rect.	1	4
283	422.11	atmosphere	995.0	270	> th	dose independent	rect.	1	4
284	422.11	atmosphere	1010.0	270	< th	dose independent	rect.	1	4
286	422.11	radiation	20.0	270	< th	dose independent	rect.	1	4
293	422.13	radiation	40.0	90	< th	dose independent	rect.	12	18
294	422.13	humidity	50.0	90	> th	dose independent	rect.	6	21
295	422.14	radiation	40.0	270	< th	dose dependent	rect.	1	4
301	422.20	humidity	80.0	10	> th	dose independent	rect.	3	12
303	422.21	temperature	30.0	90	< th	dose dependent	rect.	3	4
308	422.24	atmosphere	995.0	90	> th	dose dependent	rect.	3	3
312	422.28	temperature	25.0	90	> th	dose independent	rect.	22	5
339	422.38	radiation	40.0	10	< th	dose dependent	rect.	12	19
345	422.42	wind	1.0	90	> th	dose independent	rect.	13	17
346	422.43	radiation	1.0	270	< th	dose independent	rect.	1	13
349	422.46	precipitation	0.1	270	< th	dose independent	rect.	1	4
350	422.46	temperature	25.0	270	< th	dose independent	rect.	16	13
352	422.46	precipitation	0.1	270	< th	dose dependent	rect.	1	4
365	422.59	wind	9.0	90	< th	dose dependent	rect.	3	3
378	422.77	humidity	50.0	90	> th	dose dependent	rect.	3	3
389	422.86	temperature	10.0	90	> th	dose dependent	rect.	3	3
407	423.09	radiation	20.0	30	< th	dose independent	rect.	3	12
416	423.22	precipitation	0.1	270	< th	dose independent	rect.	4	23
417	423.22	precipitation	0.1	270	< th	dose dependent	rect.	4	23
419	423.24	wind	5.0	10	< th	dose independent	rect.	3	4
422	423.27	wind	5.0	270	< th	dose independent	rect.	3	1
426	423.28	temperature	30.0	270	< th	dose dependent	rect.	1	4
437	423.36	atmosphere	995.0	270	> th	dose dependent	rect.	1	4
443	423.41	radiation	20.0	10	< th	dose dependent	rect.	11	22
453	423.48	radiation	20.0	10	< th	dose dependent	sin	4	NA
478	423.61	precipitation	0.1	10	< th	dose independent	rect.	7	20
479	423.61	precipitation	0.1	10	< th	dose dependent	rect.	7	20
494	423.72	atmosphere	1015.0	90	< th	dose independent	rect.	6	21
496	423.74	temperature	25.0	270	> th	dose independent	rect.	22	2
515	423.84	radiation	1.0	10	< th	dose dependent	rect.	4	2
519	423.86	atmosphere	995.0	10	> th	dose independent	rect.	7	20
521	423.86	temperature	25.0	270	> th	dose dependent	rect.	19	13
529	423.92	wind	9.0	270	< th	dose dependent	rect.	3	1
540	423.96	temperature	10.0	10	> th	dose independent	rect.	3	4
542	423.96	temperature	30.0	10	< th	dose independent	rect.	3	4
543	423.96	humidity	50.0	10	> th	dose independent	rect.	3	4
546	423.96	atmosphere	995.0	10	> th	dose independent	rect.	3	4
551	423.96	temperature	10.0	10	> th	dose independent	rect.	7	20
559	423.99	radiation	40.0	10	< th	dose independent	rect.	13	18
570	424.02	wind	9.0	90	< th	dose independent	rect.	6	7
595	424.10	precipitation	0.1	10	< th	dose independent	rect.	3	4
597	424.10	precipitation	0.1	10	< th	dose dependent	rect.	3	4
609	424.17	wind	9.0	270	< th	dose dependent	rect.	1	4
611	424.19	temperature	10.0	270	> th	dose independent	rect.	3	1
613	424.19	temperature	30.0	270	< th	dose independent	rect.	3	1
614	424.19	humidity	50.0	270	> th	dose independent	rect.	3	1
617	424.19	atmosphere	995.0	270	> th	dose independent	rect.	3	1
618	424.19	atmosphere	1010.0	270	< th	dose independent	rect.	3	1
620	424.19	radiation	1.0	270	< th	dose independent	rect.	3	1
627	424.19	temperature	10.0	270	> th	dose independent	rect.	4	23
657	424.29	wind	1.0	90	> th	dose independent	rect.	6	21
659	424.29	radiation	1.0	720	< th	dose dependent	rect.	17	12
738	424.62	atmosphere	1015.0	90	< th	dose dependent	rect.	3	3
740	424.62	radiation	20.0	30	< th	dose dependent	rect.	3	23
757	424.68	humidity	50.0	270	> th	dose dependent	rect.	1	4
789	424.77	wind	1.0	90	> th	dose independent	rect.	3	16
803	424.80	humidity	80.0	10	> th	dose independent	rect.	3	8
820	424.86	radiation	1.0	90	> th	dose independent	rect.	6	7
840	424.97	radiation	20.0	90	< th	dose independent	rect.	12	18
898	425.08	temperature	25.0	270	> th	dose dependent	rect.	22	2
955	425.31	wind	9.0	4320	> th	dose dependent	rect.	18	1
968	425.35	temperature	30.0	270	< th	dose dependent	rect.	23	6