Os03g0650700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein synthesis factor, GTP-binding domain containing protein.
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Os03g0650700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein synthesis factor, GTP-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.03 | 0.479 | 8.88 | 0.329 | 0.919 | 1.36 | 0.0515 | 2.48 | 0.00138 | 10.1 | 14.71 | 8 | -- | -- |
| 107.5 | 0.487 | 8.92 | -0.00855 | 0.91 | 1.19 | 0.523 | -- | -0.0891 | 10.2 | 18.22 | 10 | -- | -- |
| 104.02 | 0.475 | 8.88 | 0.342 | 0.919 | 1.36 | -- | 2.53 | 0.00194 | 10.1 | 14.83 | 6 | -- | -- |
| 108.41 | 0.485 | 8.92 | -0.00354 | 0.907 | 1.22 | -- | -- | -0.0939 | 10.1 | 18.49 | 6 | -- | -- |
| 150.07 | 0.571 | 8.92 | 0.211 | -- | 1.94 | -- | 2.41 | -0.0765 | -- | 12.43 | 4 | -- | -- |
| 126.16 | 0.527 | 8.88 | 0.235 | 1.16 | -- | 0.749 | -- | 0.105 | 11.4 | -- | -- | -- | -- |
| 128.55 | 0.531 | 8.88 | 0.264 | 1.16 | -- | -- | -- | 0.107 | 11.4 | -- | -- | -- | -- |
| 152.97 | 0.576 | 8.96 | -0.111 | -- | 1.71 | -- | -- | -0.174 | -- | 18 | 3 | -- | -- |
| 108.38 | 0.485 | 8.92 | -- | 0.905 | 1.21 | -- | -- | -0.0981 | 10.1 | 18.5 | 5 | -- | -- |
| 212.54 | 0.681 | 8.9 | 0.234 | -- | -- | -- | -- | 0.0955 | -- | -- | -- | -- | -- |
| 130.39 | 0.534 | 8.88 | -- | 1.16 | -- | -- | -- | 0.0775 | 11.3 | -- | -- | -- | -- |
| 153.2 | 0.576 | 8.96 | -- | -- | 1.68 | -- | -- | -0.158 | -- | 18.23 | 2 | -- | -- |
| 213.98 | 0.683 | 8.91 | -- | -- | -- | -- | -- | 0.0695 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 44 | 95.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 57 | 95.86 | temperature | 10 | 30 | > th | dose dependent | sin | 4 | NA |
| 63 | 96.10 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 20 |
| 77 | 96.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 116 | 97.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 119 | 97.91 | temperature | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 120 | 97.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 141 | 98.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 153 | 98.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 156 | 98.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 187 | 99.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 242 | 99.75 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 8 |
| 250 | 99.85 | temperature | 25 | 90 | < th | dose independent | sin | 6 | NA |
| 320 | 100.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 326 | 100.89 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 10 |
| 335 | 100.95 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 369 | 101.29 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 16 |
| 426 | 101.77 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 6 |
| 485 | 102.30 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 20 |
| 495 | 102.38 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 12 |
| 502 | 102.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 503 | 102.41 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 8 |
| 504 | 102.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 511 | 102.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 564 | 102.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 610 | 103.22 | temperature | 25 | 90 | > th | dose independent | sin | 6 | NA |
| 628 | 103.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 703 | 103.77 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 711 | 103.82 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 713 | 103.83 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 733 | 103.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 765 | 104.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 776 | 104.14 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 801 | 104.24 | humidity | 60 | 720 | > th | dose dependent | sin | 13 | NA |
| 824 | 104.37 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 859 | 104.52 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 4 |
| 912 | 104.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 963 | 104.90 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 20 |
| 992 | 105.00 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |