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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0648200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant MuDR transposase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0172) R2 : 3.97e-08
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000154 (0.0362) R2dN8 : 5.13e-08 R2N8 : 3.97e-08
σ : 0.324
deviance : 48.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.5 0.313 3.22 0.0771 0.168 -0.113 -0.412 -0.928 -0.00778 6.33 70.27 5846 -- --
45.66 0.315 3.23 0.0482 0.168 -0.159 -0.38 -- -0.0509 6.35 76.79 8385 -- --
44.73 0.311 3.23 0.0847 0.176 -0.093 -- -0.972 -0.00633 6.18 70.88 6422 -- --
46.09 0.316 3.23 0.0456 0.166 -0.166 -- -- -0.0551 6.47 76.01 8386 -- --
46.19 0.317 3.23 0.0804 -- -0.025 -- -1.01 0.00525 -- 70 6456 -- --
46.2 0.319 3.22 0.0163 0.17 -- -0.419 -- -0.00349 6.24 -- -- -- --
46.64 0.32 3.22 0.0116 0.168 -- -- -- -0.002 6.3 -- -- -- --
47.52 0.321 3.24 0.0481 -- -0.17 -- -- -0.0557 -- 82 8445 -- --
46.11 0.316 3.23 -- 0.168 -0.171 -- -- -0.0692 6.43 76.02 8500 -- --
48.1 0.324 3.22 0.0161 -- -- -- -- 0.00163 -- -- -- -- --
46.64 0.319 3.22 -- 0.168 -- -- -- -0.00329 6.3 -- -- -- --
47.51 0.321 3.24 -- -- -0.187 -- -- -0.0724 -- 82 8428 -- --
48.11 0.324 3.22 -- -- -- -- -- -0.000154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.04 humidity 90.0 10 < th dose independent rect. 4 1
3 43.08 atmosphere 1005.0 30 > th dose dependent rect. 2 3
7 43.70 humidity 80.0 14400 < th dose dependent rect. 3 6
10 43.75 wind 1.0 30 > th dose independent rect. 4 1
11 43.77 temperature 25.0 270 > th dose independent rect. 1 1
12 43.77 temperature 25.0 90 > th dose dependent rect. 1 4
15 43.79 wind 1.0 30 < th dose independent rect. 10 1
16 43.79 temperature 10.0 1440 > th dose independent rect. 11 1
20 43.79 atmosphere 995.0 1440 > th dose independent rect. 11 1
23 43.79 precipitation 0.1 1440 < th dose independent rect. 11 1
24 43.79 temperature 10.0 1440 > th dose independent rect. 12 23
27 43.79 wind 1.0 30 < th dose dependent rect. 10 1
28 43.79 precipitation 0.1 1440 < th dose dependent rect. 11 1
32 43.82 temperature 25.0 270 > th dose dependent rect. 1 1
36 43.84 humidity 80.0 14400 < th dose dependent rect. 21 13
41 43.87 wind 1.0 30 > th dose dependent rect. 4 1
45 43.88 temperature 25.0 90 > th dose independent rect. 1 4
46 43.88 atmosphere 1005.0 30 > th dose dependent rect. 4 1
47 43.89 temperature 25.0 90 > th dose independent rect. 4 1
53 43.94 humidity 90.0 10 < th dose dependent rect. 4 1
61 43.98 humidity 70.0 30 < th dose independent rect. 10 1
62 43.98 temperature 25.0 30 > th dose dependent rect. 10 1
67 44.00 atmosphere 1000.0 10 < th dose independent rect. 17 3
73 44.00 atmosphere 1000.0 30 < th dose dependent rect. 17 3
81 44.03 temperature 25.0 90 > th dose dependent rect. 4 1
88 44.07 atmosphere 1010.0 30 < th dose independent rect. 10 1
90 44.08 humidity 70.0 14400 > th dose independent rect. 20 14
96 44.10 humidity 70.0 14400 > th dose independent rect. 7 3
109 44.11 humidity 70.0 14400 < th dose independent rect. 8 2
111 44.11 humidity 70.0 14400 < th dose independent rect. 20 14
115 44.13 humidity 70.0 4320 > th dose independent rect. 10 2
132 44.14 humidity 70.0 30 < th dose dependent rect. 10 1
154 44.16 radiation 40.0 30 < th dose independent rect. 10 1
155 44.16 humidity 70.0 4320 < th dose independent rect. 10 2
167 44.20 temperature 25.0 30 > th dose independent rect. 10 1
170 44.20 atmosphere 1000.0 30 > th dose independent rect. 3 23
172 44.21 wind 1.0 14400 < th dose dependent rect. 2 1
176 44.22 wind 3.0 14400 > th dose independent rect. 19 1
177 44.22 radiation 20.0 30 > th dose independent rect. 10 1
188 44.25 wind 3.0 14400 < th dose independent rect. 19 1
204 44.29 atmosphere 1005.0 30 > th dose independent rect. 10 1
208 44.30 atmosphere 1005.0 30 > th dose independent rect. 2 3
210 44.30 humidity 50.0 4320 > th dose dependent rect. 11 2
213 44.31 humidity 80.0 14400 < th dose dependent sin 8 NA
237 44.34 atmosphere 1000.0 270 < th dose independent rect. 6 20
250 44.36 wind 5.0 30 < th dose dependent rect. 10 1
252 44.36 atmosphere 995.0 30 > th dose dependent rect. 10 1
278 44.38 temperature 30.0 720 < th dose independent rect. 9 12
281 44.38 humidity 50.0 14400 > th dose dependent rect. 8 1
284 44.38 humidity 90.0 4320 < th dose dependent rect. 11 2
314 44.40 humidity 80.0 4320 < th dose dependent rect. 14 1
317 44.40 humidity 80.0 4320 < th dose dependent rect. 11 4
318 44.41 humidity 60.0 30 > th dose independent rect. 10 1
326 44.41 temperature 30.0 720 < th dose independent rect. 1 20
337 44.42 wind 1.0 14400 < th dose independent rect. 2 1
338 44.42 temperature 30.0 30 < th dose independent rect. 10 1
358 44.43 humidity 50.0 14400 > th dose independent rect. 15 1
374 44.44 temperature 10.0 30 > th dose independent rect. 10 1
377 44.44 humidity 90.0 30 < th dose independent rect. 10 1
381 44.44 precipitation 0.1 30 < th dose independent rect. 10 1
384 44.44 temperature 10.0 30 > th dose independent rect. 11 23
386 44.44 wind 3.0 14400 < th dose dependent rect. 19 1
388 44.44 humidity 60.0 14400 < th dose dependent rect. 12 1
389 44.44 precipitation 0.1 30 < th dose dependent rect. 10 1
403 44.45 humidity 60.0 14400 < th dose dependent rect. 12 4
410 44.46 wind 1.0 30 > th dose independent rect. 10 1
411 44.46 wind 7.0 1440 < th dose independent rect. 5 1
413 44.46 temperature 10.0 1440 > th dose independent rect. 5 1
416 44.46 temperature 30.0 1440 < th dose independent rect. 5 1
420 44.46 humidity 50.0 1440 > th dose independent rect. 5 1
430 44.46 atmosphere 995.0 1440 > th dose independent rect. 5 1
431 44.46 atmosphere 1015.0 1440 < th dose independent rect. 5 1
432 44.46 radiation 20.0 1440 < th dose independent rect. 5 1
442 44.46 atmosphere 1000.0 270 < th dose independent rect. 22 21
443 44.46 temperature 10.0 1440 > th dose independent rect. 6 23
484 44.47 radiation 40.0 30 < th dose dependent rect. 10 1
506 44.49 atmosphere 1005.0 30 > th dose independent rect. 4 1
536 44.49 temperature 25.0 30 > th dose dependent rect. 17 17
537 44.50 humidity 70.0 4320 > th dose independent sin 3 NA
553 44.50 humidity 50.0 14400 > th dose independent rect. 14 16
563 44.50 temperature 30.0 30 < th dose dependent rect. 4 1
605 44.51 humidity 50.0 14400 > th dose independent rect. 14 3
643 44.51 humidity 50.0 4320 > th dose dependent rect. 3 12
646 44.52 wind 3.0 30 < th dose independent rect. 4 1
673 44.52 atmosphere 1000.0 270 < th dose independent rect. 6 13
686 44.52 atmosphere 1000.0 90 < th dose independent rect. 16 20
714 44.53 temperature 10.0 30 > th dose independent rect. 4 1
716 44.53 temperature 30.0 30 < th dose independent rect. 4 1
717 44.53 humidity 50.0 30 > th dose independent rect. 4 1
721 44.53 atmosphere 1010.0 30 < th dose independent rect. 4 1
723 44.53 radiation 1.0 30 < th dose independent rect. 4 1
736 44.53 wind 9.0 4320 < th dose independent rect. 2 9
756 44.53 temperature 10.0 30 > th dose independent rect. 5 23
759 44.53 radiation 1.0 30 < th dose dependent rect. 4 1
773 44.53 humidity 90.0 4320 < th dose dependent rect. 6 10
797 44.54 humidity 70.0 4320 < th dose independent sin 3 NA
801 44.54 precipitation 0.1 30 < th dose independent rect. 4 1
838 44.54 temperature 10.0 30 > th dose dependent rect. 4 1
841 44.54 precipitation 0.1 30 < th dose dependent rect. 4 1
875 44.54 humidity 50.0 4320 > th dose dependent rect. 23 17
903 44.55 humidity 60.0 14400 < th dose dependent sin 20 NA
907 44.55 radiation 1.0 30 > th dose dependent rect. 10 1
977 44.56 wind 9.0 4320 > th dose independent rect. 22 13