Os03g0647500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0647500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.55 | 0.549 | 7.11 | 0.942 | 2.29 | 0.979 | 0.594 | 0.804 | 0.2 | 19.4 | 25.6 | 91 | -- | -- |
| 136.67 | 0.544 | 7.12 | 0.877 | 2.3 | 1.02 | 0.655 | -- | 0.197 | 19.4 | 26 | 91 | -- | -- |
| 137.39 | 0.546 | 7.11 | 0.937 | 2.29 | 1.01 | -- | 0.928 | 0.215 | 19.4 | 25.96 | 91 | -- | -- |
| 137.63 | 0.546 | 7.12 | 0.843 | 2.29 | 1.1 | -- | -- | 0.199 | 19.4 | 26.14 | 92 | -- | -- |
| 308.65 | 0.818 | 7.11 | 0.489 | -- | 2.44 | -- | -0.489 | -0.0417 | -- | 24.51 | 418 | -- | -- |
| 154.18 | 0.582 | 7.11 | 1.02 | 2.54 | -- | 0.981 | -- | 0.234 | 18.9 | -- | -- | -- | -- |
| 156.66 | 0.586 | 7.11 | 1 | 2.54 | -- | -- | -- | 0.236 | 18.9 | -- | -- | -- | -- |
| 308.7 | 0.818 | 7.1 | 0.525 | -- | 2.54 | -- | -- | -0.0217 | -- | 24.7 | 433 | -- | -- |
| 155.51 | 0.581 | 7.14 | -- | 2.22 | 1.29 | -- | -- | 0.0843 | 19.6 | 25.7 | 101 | -- | -- |
| 495.01 | 1.04 | 7.06 | 0.951 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 183.27 | 0.633 | 7.14 | -- | 2.53 | -- | -- | -- | 0.124 | 18.9 | -- | -- | -- | -- |
| 315.79 | 0.828 | 7.12 | -- | -- | 2.61 | -- | -- | -0.0934 | -- | 24.6 | 435 | -- | -- |
| 518.86 | 1.06 | 7.08 | -- | -- | -- | -- | -- | 0.0824 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.90 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 14 |
| 4 | 133.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 15 | 134.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 16 | 134.19 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 17 | 134.21 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 18 | 134.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 41 | 134.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 58 | 134.88 | temperature | 25 | 10 | > th | dose dependent | sin | 22 | NA |
| 102 | 135.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 183 | 136.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 203 | 136.54 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 220 | 136.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 221 | 136.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 15 |
| 270 | 136.93 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 307 | 137.08 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 368 | 137.25 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 419 | 137.49 | radiation | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 423 | 137.49 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 463 | 137.61 | temperature | 30 | 270 | < th | dose independent | sin | 4 | NA |
| 509 | 137.77 | radiation | 20 | 270 | < th | dose independent | rect. | 4 | 13 |
| 542 | 137.85 | radiation | 40 | 270 | < th | dose independent | sin | 7 | NA |
| 546 | 137.86 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 23 |
| 560 | 137.90 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 21 |
| 568 | 137.92 | radiation | 40 | 270 | > th | dose independent | sin | 7 | NA |
| 599 | 138.03 | radiation | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 606 | 138.05 | temperature | 30 | 270 | > th | dose independent | sin | 4 | NA |
| 613 | 138.08 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 668 | 138.24 | temperature | 30 | 90 | > th | dose independent | sin | 2 | NA |
| 694 | 138.30 | radiation | 10 | 270 | > th | dose dependent | no | NA | NA |
| 887 | 138.54 | radiation | 20 | 270 | > th | dose independent | sin | 2 | NA |
| 888 | 138.54 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |