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Os03g0646900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0125) R2 : 0.0659
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.15 (0.0264) R2dN8 : 0.0852 R2N8 : 0.0659
σ : 0.236
deviance : 25.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.46 0.191 12 0.0833 0.333 0.228 0.254 -0.00303 0.191 23.9 1015 5417 -- --
16.46 0.189 12 0.0827 0.333 0.228 0.254 -- 0.191 23.9 1015 5417 -- --
16.74 0.191 12 0.0733 0.332 0.23 -- 0.00713 0.191 24 1015 5417 -- --
16.74 0.191 12 0.0722 0.332 0.23 -- -- 0.191 24 1015 5417 -- --
23.69 0.227 12 0.08 -- 0.228 -- 0.0106 0.194 -- 1015 5417 -- --
18.27 0.2 12 0.0314 0.333 -- 0.264 -- 0.15 23.9 -- -- -- --
18.57 0.202 12 0.0206 0.332 -- -- -- 0.149 23.9 -- -- -- --
23.69 0.227 12 0.0825 -- 0.228 -- -- 0.195 -- 1015 5417 -- --
16.82 0.191 12 -- 0.336 0.214 -- -- 0.184 24 1015 5013 -- --
25.49 0.236 12 0.0307 -- -- -- -- 0.153 -- -- -- -- --
18.58 0.202 12 -- 0.332 -- -- -- 0.146 23.9 -- -- -- --
23.76 0.227 12 -- -- 0.218 -- -- 0.183 -- 1014 4906 -- --
25.52 0.236 12 -- -- -- -- -- 0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.11 temperature 15 10 > th dose dependent rect. 6 10
5 16.20 temperature 15 10 > th dose dependent rect. 6 21
7 16.23 humidity 50 30 > th dose dependent rect. 7 23
11 16.28 humidity 60 10 > th dose independent rect. 16 14
13 16.29 temperature 25 10 > th dose independent rect. 6 10
14 16.30 radiation 10 1440 > th dose independent rect. 11 1
17 16.31 wind 7 14400 < th dose independent rect. 17 1
19 16.33 temperature 15 10 > th dose dependent rect. 6 12
20 16.33 temperature 20 10 > th dose dependent rect. 24 16
22 16.34 wind 7 14400 > th dose independent rect. 17 1
24 16.34 humidity 50 10 > th dose dependent rect. 16 14
25 16.35 humidity 50 14400 < th dose independent rect. 16 22
29 16.36 humidity 50 14400 > th dose independent rect. 16 22
30 16.36 humidity 50 14400 < th dose dependent rect. 16 20
32 16.39 humidity 50 14400 > th dose independent rect. 13 1
38 16.40 humidity 50 14400 > th dose independent sin 9 NA
39 16.40 humidity 60 14400 < th dose dependent rect. 18 16
40 16.41 humidity 50 14400 < th dose independent sin 9 NA
43 16.42 humidity 50 14400 < th dose independent rect. 13 1
48 16.43 humidity 50 14400 < th dose independent rect. 10 4
50 16.43 humidity 50 14400 > th dose independent rect. 8 6
59 16.43 humidity 50 14400 > th dose independent rect. 3 11
80 16.43 humidity 50 14400 < th dose dependent sin 10 NA
81 16.43 humidity 60 14400 < th dose dependent rect. 8 2
120 16.45 humidity 50 14400 < th dose independent rect. 10 2
147 16.46 humidity 50 14400 < th dose independent sin 3 NA
159 16.46 humidity 50 14400 < th dose independent rect. 10 7
201 16.47 humidity 50 14400 > th dose independent sin 3 NA
206 16.47 humidity 50 14400 < th dose independent sin 1 NA
215 16.47 humidity 50 14400 > th dose independent rect. 8 9
222 16.47 temperature 25 30 > th dose independent rect. 24 16
233 16.47 wind 7 14400 > th dose dependent rect. 17 1
247 16.48 humidity 50 14400 > th dose independent sin 1 NA
249 16.48 humidity 50 14400 < th dose independent sin 23 NA
252 16.48 humidity 50 14400 > th dose independent rect. 10 7
254 16.48 temperature 30 10 < th dose independent rect. 16 14
263 16.49 humidity 50 14400 < th dose independent no NA NA
412 16.50 humidity 50 14400 > th dose independent no NA NA
459 16.50 humidity 50 14400 > th dose independent rect. 3 20
501 16.50 radiation 10 4320 < th dose dependent rect. 11 2
508 16.51 atmosphere 1015 4320 > th dose independent rect. 9 4
509 16.51 atmosphere 1015 4320 < th dose independent rect. 9 4
514 16.51 atmosphere 1015 4320 > th dose independent rect. 8 6
622 16.52 humidity 60 14400 > th dose independent rect. 8 1
657 16.52 humidity 50 14400 < th dose independent rect. 13 23
660 16.52 temperature 20 10 > th dose dependent rect. 17 23
663 16.53 atmosphere 1015 4320 > th dose independent rect. 11 1
752 16.54 atmosphere 1015 4320 > th dose dependent rect. 10 1
754 16.54 atmosphere 1015 4320 > th dose dependent rect. 8 5
758 16.55 atmosphere 1015 4320 < th dose independent rect. 11 1
759 16.55 wind 1 14400 > th dose independent rect. 8 2
788 16.55 wind 7 14400 > th dose dependent rect. 14 7
862 16.56 humidity 50 14400 < th dose dependent rect. 13 23
873 16.57 wind 7 14400 > th dose independent rect. 13 8
888 16.58 atmosphere 1015 4320 > th dose independent sin 1 NA
889 16.58 atmosphere 1015 4320 < th dose independent sin 0 NA
897 16.58 wind 7 14400 < th dose independent rect. 13 8
911 16.58 humidity 50 14400 < th dose dependent no NA NA
916 16.58 humidity 50 14400 < th dose dependent rect. 9 8