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Os03g0646800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA polymerase, beta subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0127) R2 : 6.68e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00148 (0.0268) R2dN8 : 8.63e-06 R2N8 : 6.68e-06
σ : 0.24
deviance : 26.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.97 0.176 10.9 0.829 0.22 -0.364 -0.00413 0.89 0.185 17.3 22.64 1169 -- --
14.45 0.177 10.9 0.607 0.223 -0.292 -0.0413 -- 0.126 17 20.44 2591 -- --
13.97 0.174 10.9 0.829 0.22 -0.364 -- 0.889 0.185 17.3 22.64 1171 -- --
14.36 0.177 10.9 0.589 0.222 -0.307 -- -- 0.124 17.3 20.7 1135 -- --
16.38 0.189 10.9 0.849 -- -0.391 -- 0.927 0.188 -- 22.99 1240 -- --
17.02 0.193 10.9 0.491 0.247 -- -0.0269 -- 0.0585 16.5 -- -- -- --
17.02 0.193 10.9 0.491 0.246 -- -- -- 0.0584 16.5 -- -- -- --
16.81 0.191 10.9 0.598 -- -0.331 -- -- 0.128 -- 20.6 1241 -- --
22.68 0.222 10.9 -- 0.226 -0.15 -- -- 0.0297 16.8 21.99 1159 -- --
20.27 0.21 10.9 0.481 -- -- -- -- 0.0519 -- -- -- -- --
23.37 0.226 10.9 -- 0.237 -- -- -- 0.00375 16.5 -- -- -- --
25.22 0.234 10.9 -- -- -0.175 -- -- 0.0294 -- 22.3 1215 -- --
26.38 0.24 10.9 -- -- -- -- -- -0.00148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.62 precipitation 0.1 43200 > th dose independent rect. 20 1
2 13.63 radiation 1.0 14400 > th dose independent rect. 16 1
3 13.64 precipitation 0.1 43200 < th dose independent rect. 20 1
4 13.64 precipitation 0.1 43200 < th dose dependent rect. 20 1
5 13.65 radiation 1.0 14400 < th dose independent rect. 16 1
9 13.66 precipitation 0.1 43200 > th dose dependent rect. 20 3
14 13.74 precipitation 0.1 43200 > th dose dependent rect. 20 1
17 13.79 temperature 20.0 1440 > th dose dependent rect. 12 3
20 13.82 radiation 1.0 4320 > th dose independent rect. 8 11
49 13.85 humidity 80.0 43200 > th dose independent rect. 17 1
54 13.86 radiation 1.0 4320 > th dose independent rect. 12 7
62 13.86 radiation 1.0 4320 < th dose independent rect. 8 11
89 13.87 radiation 1.0 4320 > th dose independent sin 17 NA
101 13.88 radiation 1.0 4320 > th dose independent rect. 14 5
137 13.89 humidity 80.0 43200 < th dose independent rect. 17 2
154 13.89 radiation 1.0 4320 < th dose independent rect. 12 14
165 13.90 radiation 1.0 4320 < th dose independent rect. 12 7
177 13.90 atmosphere 1010.0 14400 > th dose dependent rect. 15 1
180 13.90 temperature 20.0 1440 > th dose dependent rect. 12 16
185 13.91 radiation 1.0 4320 < th dose independent sin 17 NA
187 13.91 atmosphere 1015.0 14400 > th dose independent rect. 20 1
188 13.91 atmosphere 1015.0 14400 < th dose independent rect. 20 1
191 13.91 temperature 20.0 1440 > th dose dependent rect. 12 14
193 13.92 atmosphere 1015.0 14400 > th dose independent sin 13 NA
195 13.92 atmosphere 1015.0 14400 < th dose independent sin 13 NA
198 13.92 atmosphere 1015.0 14400 < th dose independent rect. 19 3
201 13.92 radiation 1.0 4320 < th dose independent rect. 14 5
204 13.92 atmosphere 1015.0 14400 < th dose independent rect. 18 7
206 13.92 atmosphere 1015.0 14400 > th dose independent rect. 18 8
235 13.92 temperature 25.0 1440 < th dose independent rect. 13 13
242 13.92 temperature 25.0 1440 > th dose independent rect. 12 14
282 13.92 atmosphere 1015.0 14400 > th dose dependent rect. 22 7
284 13.92 temperature 20.0 1440 > th dose dependent rect. 12 9
298 13.93 atmosphere 1015.0 14400 > th dose independent no NA NA
301 13.93 atmosphere 1015.0 14400 < th dose independent no NA NA
378 13.93 atmosphere 1015.0 14400 > th dose independent rect. 5 19
388 13.93 atmosphere 1015.0 14400 < th dose independent rect. 5 19
395 13.93 atmosphere 1015.0 14400 > th dose independent rect. 3 20
407 13.93 atmosphere 1015.0 14400 > th dose independent rect. 21 20
409 13.93 atmosphere 1015.0 14400 < th dose independent rect. 3 20
421 13.93 atmosphere 1015.0 14400 < th dose independent rect. 21 20
556 13.93 atmosphere 1015.0 14400 > th dose dependent sin 9 NA
560 13.93 radiation 1.0 14400 < th dose dependent rect. 16 1
567 13.93 atmosphere 1015.0 14400 > th dose dependent rect. 23 5
611 13.94 temperature 25.0 1440 < th dose independent sin 16 NA
614 13.94 atmosphere 1015.0 14400 < th dose independent sin 2 NA
660 13.94 atmosphere 1015.0 14400 > th dose independent rect. 22 18
670 13.94 atmosphere 1015.0 14400 < th dose independent rect. 22 18
684 13.94 atmosphere 1015.0 14400 < th dose independent rect. 19 19
717 13.94 atmosphere 1015.0 14400 > th dose dependent sin 3 NA
718 13.94 atmosphere 1015.0 14400 > th dose dependent rect. 24 1
720 13.94 atmosphere 1015.0 14400 > th dose dependent rect. 24 3
768 13.95 temperature 25.0 1440 > th dose independent sin 16 NA
771 13.95 atmosphere 1015.0 14400 > th dose independent sin 1 NA
778 13.95 atmosphere 1015.0 14400 > th dose independent rect. 10 3
781 13.95 atmosphere 1015.0 14400 < th dose independent rect. 9 4
785 13.95 atmosphere 1015.0 14400 < th dose independent rect. 8 6
921 13.95 atmosphere 1015.0 14400 > th dose dependent rect. 9 2
926 13.95 atmosphere 1015.0 14400 > th dose dependent rect. 8 4
930 13.95 atmosphere 1015.0 14400 > th dose dependent rect. 7 6