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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0644100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.042) R2 : 0.0227
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.288 (0.0885) R2dN8 : 0.0294 R2N8 : 0.0227
σ : 0.791
deviance : 287.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
253.73 0.748 4.54 -0.00175 0.46 2.43 -0.104 -5.58 -0.199 11.8 1000 1353 -- --
254.35 0.743 4.51 0.163 0.464 1.53 -0.0834 -- -0.208 11.8 999.6 1422 -- --
253.77 0.742 4.53 -0.000882 0.464 2.42 -- -5.54 -0.199 11.8 1000 1350 -- --
254.39 0.743 4.51 0.159 0.464 1.5 -- -- -0.204 11.7 999.8 1440 -- --
266.83 0.761 4.54 0.00317 -- 2.47 -- -5.55 -0.205 -- 999.6 1497 -- --
271.79 0.773 4.52 0.287 0.463 -- -0.172 -- -0.252 11.8 -- -- -- --
271.91 0.772 4.52 0.279 0.464 -- -- -- -0.253 11.7 -- -- -- --
267.16 0.761 4.52 0.168 -- 1.65 -- -- -0.208 -- 998.9 1832 -- --
255.02 0.744 4.51 -- 0.461 1.47 -- -- -0.218 11.7 1000 1426 -- --
285.46 0.789 4.53 0.266 -- -- -- -- -0.259 -- -- -- -- --
273.97 0.774 4.52 -- 0.461 -- -- -- -0.284 11.7 -- -- -- --
267.85 0.762 4.52 -- -- 1.63 -- -- -0.223 -- 999.2 1814 -- --
287.33 0.791 4.53 -- -- -- -- -- -0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 247.24 wind 1.0 14400 < th dose independent rect. 2 6
2 247.62 wind 1.0 14400 > th dose independent rect. 2 6
3 247.76 wind 9.0 30 < th dose independent rect. 3 23
4 247.85 wind 1.0 14400 < th dose dependent rect. 2 6
6 248.19 wind 1.0 14400 > th dose independent rect. 4 3
8 248.26 wind 1.0 14400 < th dose independent rect. 4 4
13 249.10 wind 1.0 14400 < th dose dependent rect. 4 4
23 250.06 atmosphere 1000.0 10 > th dose independent rect. 3 23
27 250.51 atmosphere 1000.0 90 > th dose independent rect. 3 8
41 251.88 atmosphere 1000.0 1440 < th dose dependent rect. 24 6
42 251.89 atmosphere 1000.0 1440 < th dose dependent rect. 1 4
47 252.02 atmosphere 1000.0 1440 < th dose dependent sin 7 NA
51 252.07 wind 1.0 43200 < th dose dependent rect. 6 1
55 252.11 atmosphere 1000.0 1440 < th dose dependent rect. 23 14
108 252.49 wind 1.0 14400 > th dose independent rect. 20 12
121 252.57 atmosphere 1000.0 1440 < th dose dependent rect. 19 13
173 252.82 atmosphere 1005.0 270 < th dose dependent rect. 24 8
174 252.83 wind 1.0 4320 < th dose independent rect. 7 1
197 252.94 wind 1.0 14400 < th dose independent rect. 2 1
233 253.09 humidity 60.0 4320 > th dose dependent rect. 11 1
244 253.18 wind 1.0 14400 < th dose dependent rect. 2 1
261 253.25 atmosphere 1005.0 10 > th dose independent rect. 2 1
276 253.31 humidity 80.0 4320 < th dose independent rect. 9 3
290 253.37 temperature 30.0 4320 > th dose dependent rect. 15 1
294 253.40 temperature 25.0 4320 > th dose dependent rect. 2 6
332 253.56 humidity 70.0 4320 > th dose independent rect. 11 1
345 253.60 temperature 30.0 4320 > th dose dependent rect. 15 21
355 253.64 wind 1.0 14400 > th dose independent rect. 1 2
372 253.68 atmosphere 1000.0 1440 < th dose independent rect. 19 14
375 253.68 humidity 90.0 4320 < th dose dependent rect. 11 1
378 253.69 atmosphere 1000.0 270 < th dose dependent sin 7 NA
384 253.70 wind 3.0 30 < th dose independent rect. 2 1
385 253.70 wind 1.0 14400 < th dose independent rect. 20 12
395 253.73 atmosphere 1005.0 30 < th dose independent sin 5 NA
401 253.74 atmosphere 1000.0 1440 > th dose independent rect. 19 16
405 253.75 atmosphere 1000.0 30 > th dose dependent rect. 2 1
412 253.76 atmosphere 1000.0 10 > th dose independent rect. 18 17
424 253.79 atmosphere 1000.0 1440 < th dose dependent no NA NA
439 253.82 temperature 25.0 30 < th dose independent rect. 2 1
446 253.82 atmosphere 1000.0 1440 < th dose dependent rect. 9 23
450 253.83 atmosphere 1000.0 1440 > th dose independent rect. 20 12
471 253.86 atmosphere 995.0 1440 > th dose independent rect. 12 16
482 253.90 atmosphere 1000.0 1440 < th dose dependent rect. 7 23
490 253.92 temperature 30.0 4320 > th dose independent rect. 15 21
496 253.94 atmosphere 1000.0 1440 < th dose independent sin 9 NA
548 254.03 atmosphere 1000.0 1440 > th dose independent sin 9 NA
564 254.06 humidity 90.0 4320 > th dose dependent rect. 8 1
580 254.11 temperature 30.0 4320 > th dose dependent rect. 8 8
625 254.17 temperature 30.0 4320 > th dose independent sin 10 NA
651 254.19 temperature 30.0 4320 > th dose dependent sin 2 NA
660 254.20 atmosphere 1000.0 1440 < th dose independent rect. 23 14
686 254.21 wind 9.0 30 < th dose dependent rect. 2 1
694 254.22 temperature 30.0 4320 < th dose independent rect. 15 21
695 254.22 temperature 30.0 4320 > th dose dependent no NA NA
811 254.23 temperature 10.0 30 > th dose independent rect. 2 1
814 254.23 humidity 50.0 30 > th dose independent rect. 2 1
818 254.23 atmosphere 1010.0 30 < th dose independent rect. 2 1
820 254.23 radiation 1.0 30 < th dose independent rect. 2 1
825 254.23 precipitation 0.1 30 < th dose independent rect. 2 1
827 254.23 temperature 10.0 30 > th dose independent rect. 3 23
829 254.23 radiation 1.0 30 < th dose dependent rect. 2 1
834 254.23 precipitation 0.1 30 < th dose dependent rect. 2 1
835 254.23 temperature 25.0 4320 > th dose dependent rect. 6 2
873 254.28 atmosphere 995.0 1440 > th dose independent rect. 12 6
875 254.28 temperature 30.0 30 < th dose dependent rect. 2 1
907 254.31 temperature 10.0 30 > th dose dependent rect. 2 1
929 254.34 atmosphere 1000.0 1440 > th dose independent rect. 23 14
960 254.37 temperature 30.0 4320 < th dose independent sin 10 NA
966 254.38 temperature 30.0 4320 > th dose dependent sin 10 NA
971 254.39 atmosphere 1005.0 90 < th dose independent rect. 24 15
994 254.43 humidity 50.0 30 > th dose dependent rect. 2 1
998 254.44 wind 1.0 30 > th dose independent rect. 2 1