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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0643700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GST6 protein (EC 2.5.1.18).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0328) R2 : 0.727
β1 : -0.821 (0.132) R2dD : 0.0301 R2D : 0.116
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.89 (0.0932) R2dE : 0.27 R2E : 0.398
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.72 (0.272) R2dD*E : 0.229 R2D*E : 0.396
γ1 : -0.129 (0.0718) R2dN8 : 0.00283 R2N8 : 0.0126
σ : 0.602
deviance : 167.28
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.11
memory length : 735
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.33
open length of G : 1.39

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.68 0.594 3.16 -0.779 0.131 1.91 -1.7 -5.05 -0.102 19.3 20.12 731 5.28 1.45
263.82 0.756 3.24 -1.65 0.189 2.36 -0.886 -- -0.304 18.1 20.5 693 5.87 1.55
164.89 0.598 3.16 -0.804 0.217 1.84 -- -4.68 -0.111 15.7 20.1 736 5.32 1.39
267.72 0.762 3.26 -1.65 0.227 2.41 -- -- -0.333 17.2 20.5 695 5.93 1.47
167.28 0.602 3.17 -0.821 -- 1.89 -- -4.72 -0.129 -- 20.11 735 5.33 1.39
353.52 0.881 3.32 -2.06 0.888 -- -3.97 -- -0.678 13.6 -- -- -- --
415.27 0.954 3.33 -2.19 0.889 -- -- -- -0.702 13 -- -- -- --
269.65 0.765 3.25 -1.62 -- 2.45 -- -- -0.326 -- 20.48 701 5.93 1.47
332.9 0.85 3.21 -- 0.205 2.8 -- -- -0.118 16.9 20.46 695 5.95 1.52
464.45 1.01 3.34 -2.22 -- -- -- -- -0.72 -- -- -- -- --
541.49 1.09 3.27 -- 0.925 -- -- -- -0.459 13.1 -- -- -- --
334.58 0.852 3.2 -- -- 2.82 -- -- -0.112 -- 20.49 699 5.98 1.47
594.66 1.14 3.29 -- -- -- -- -- -0.473 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.44 temperature 20 720 < th dose independent rect. 5 2
5 200.29 temperature 20 720 > th dose dependent rect. 4 6
12 205.23 temperature 20 720 > th dose independent rect. 4 3
18 206.74 temperature 20 720 < th dose dependent rect. 4 1
22 208.12 temperature 25 720 < th dose dependent rect. 3 6
28 209.33 temperature 25 720 < th dose dependent rect. 4 3
66 214.47 temperature 20 720 > th dose dependent rect. 24 13
69 214.66 temperature 20 720 > th dose dependent sin 6 NA
110 218.05 temperature 30 720 < th dose dependent sin 6 NA
145 220.71 temperature 30 720 < th dose dependent rect. 24 14
161 221.37 temperature 30 720 < th dose dependent rect. 1 12
170 221.86 temperature 20 720 > th dose independent rect. 1 14
173 222.13 temperature 20 720 < th dose independent rect. 24 15
244 224.69 temperature 20 720 < th dose independent sin 5 NA
256 224.97 humidity 60 43200 < th dose dependent rect. 19 5
262 225.19 temperature 20 720 > th dose independent sin 5 NA
353 227.81 temperature 20 1440 < th dose independent rect. 21 3
365 228.21 temperature 20 1440 > th dose independent rect. 21 2
368 228.40 humidity 50 43200 < th dose independent rect. 20 1
539 233.69 humidity 60 43200 > th dose independent rect. 21 2
561 234.05 temperature 25 270 < th dose independent rect. 9 2
572 234.28 temperature 20 1440 < th dose independent rect. 21 9
615 235.39 humidity 60 43200 > th dose independent rect. 19 5
625 235.59 temperature 20 1440 > th dose independent rect. 21 9
643 236.09 radiation 40 14400 < th dose independent rect. 17 15
655 236.40 radiation 40 14400 < th dose independent rect. 6 2
656 236.42 radiation 40 14400 < th dose independent rect. 4 4
671 236.68 radiation 40 14400 < th dose independent rect. 2 6
677 236.79 radiation 40 14400 < th dose independent rect. 20 12
682 236.93 radiation 40 14400 < th dose independent rect. 24 8
694 237.14 radiation 40 14400 < th dose independent rect. 22 10
779 238.72 radiation 30 14400 > th dose dependent rect. 7 1
798 238.86 humidity 50 43200 > th dose independent rect. 20 7
823 239.52 temperature 25 270 < th dose independent rect. 8 5
914 241.27 temperature 15 1440 > th dose dependent rect. 2 1
921 241.50 atmosphere 1010 720 > th dose independent rect. 4 11