Os03g0641700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0641700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.92 | 0.248 | 11.3 | 0.615 | 0.782 | 0.445 | -0.2 | -0.038 | 0.196 | 21.7 | 67.38 | 19 | -- | -- |
| 27.91 | 0.246 | 11.3 | 0.613 | 0.782 | 0.448 | -0.213 | -- | 0.194 | 21.7 | 66.59 | 21 | -- | -- |
| 28.01 | 0.247 | 11.3 | 0.63 | 0.784 | 0.441 | -- | -0.125 | 0.193 | 21.8 | 66.44 | 23 | -- | -- |
| 28.07 | 0.247 | 11.3 | 0.621 | 0.786 | 0.442 | -- | -- | 0.193 | 21.8 | 66 | 23 | -- | -- |
| 59.21 | 0.36 | 11.3 | 0.622 | -- | 0.728 | -- | -0.205 | 0.204 | -- | 64.47 | 12 | -- | -- |
| 32.38 | 0.267 | 11.3 | 0.617 | 0.951 | -- | -0.0561 | -- | 0.155 | 23.1 | -- | -- | -- | -- |
| 32.4 | 0.267 | 11.3 | 0.62 | 0.951 | -- | -- | -- | 0.155 | 23.1 | -- | -- | -- | -- |
| 59.27 | 0.36 | 11.3 | 0.616 | -- | 0.728 | -- | -- | 0.204 | -- | 63.88 | 8 | -- | -- |
| 38.18 | 0.289 | 11.3 | -- | 0.773 | 0.441 | -- | -- | 0.123 | 21.8 | 66 | 23 | -- | -- |
| 88.81 | 0.44 | 11.3 | 0.642 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 42.51 | 0.305 | 11.3 | -- | 0.957 | -- | -- | -- | 0.0862 | 23.2 | -- | -- | -- | -- |
| 69.25 | 0.389 | 11.3 | -- | -- | 0.738 | -- | -- | 0.136 | -- | 64 | 5 | -- | -- |
| 99.68 | 0.466 | 11.3 | -- | -- | -- | -- | -- | 0.0918 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.91 | humidity | 70 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 2 | 27.93 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 3 | 27.98 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 5 | 27.99 | radiation | 40 | 10 | < th | dose dependent | sin | 9 | NA |
| 7 | 28.00 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 8 | 28.00 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 12 |
| 12 | 28.05 | humidity | 70 | 10 | > th | dose dependent | no | NA | NA |
| 25 | 28.07 | humidity | 70 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 26 | 28.07 | humidity | 70 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 30 | 28.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 8 |
| 35 | 28.08 | humidity | 70 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 47 | 28.10 | humidity | 70 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 62 | 28.13 | humidity | 60 | 90 | > th | dose dependent | rect. | 11 | 8 |
| 65 | 28.14 | humidity | 80 | 10 | > th | dose independent | rect. | 24 | 18 |
| 66 | 28.14 | humidity | 90 | 1440 | < th | dose dependent | sin | 6 | NA |
| 131 | 28.27 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 138 | 28.29 | radiation | 1 | 10 | > th | dose dependent | sin | 10 | NA |
| 155 | 28.32 | humidity | 50 | 1440 | > th | dose dependent | sin | 4 | NA |
| 162 | 28.33 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 195 | 28.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 201 | 28.35 | humidity | 60 | 14400 | < th | dose dependent | rect. | 15 | 18 |
| 202 | 28.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 207 | 28.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 214 | 28.36 | humidity | 60 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 241 | 28.38 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 252 | 28.39 | humidity | 80 | 30 | > th | dose dependent | sin | 23 | NA |
| 261 | 28.39 | humidity | 70 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 300 | 28.44 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 308 | 28.46 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 328 | 28.48 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 335 | 28.49 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 369 | 28.53 | humidity | 60 | 14400 | < th | dose independent | sin | 12 | NA |
| 377 | 28.53 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 18 |
| 392 | 28.54 | humidity | 60 | 14400 | < th | dose dependent | sin | 12 | NA |
| 400 | 28.54 | humidity | 70 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 406 | 28.55 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 475 | 28.60 | humidity | 90 | 30 | < th | dose dependent | rect. | 2 | 22 |
| 477 | 28.61 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 490 | 28.61 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 508 | 28.63 | humidity | 60 | 14400 | > th | dose independent | sin | 12 | NA |
| 513 | 28.63 | humidity | 80 | 10 | > th | dose independent | rect. | 8 | 10 |
| 716 | 28.72 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 762 | 28.74 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 824 | 28.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 825 | 28.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 849 | 28.78 | humidity | 70 | 90 | > th | dose independent | rect. | 10 | 9 |
| 854 | 28.78 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 19 |
| 859 | 28.78 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 20 |
| 878 | 28.79 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 889 | 28.79 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 927 | 28.80 | humidity | 60 | 10 | > th | dose dependent | rect. | 24 | 16 |