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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0641300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.052) R2 : 0.0929
β1 : -0.16 (0.191) R2dD : 0.0014 R2D : -0.00421
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.04 (1.07) R2dE : 0.191 R2E : -0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -37.9 (5.71) R2dD*E : 0.266 R2D*E : -0.101
γ1 : -0.0855 (0.111) R2dN8 : 0.00163 R2N8 : 0.00157
σ : 0.971
deviance : 434.26
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 83
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.39
open length of G : 1.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
432.67 0.977 3.15 -0.172 0.132 6.11 0.526 -38.8 -0.0869 6.7 1005 88 8.36 1.18
474.79 1.02 3.13 0.000742 0.204 -0.241 -0.264 -- -0.129 9.13 998.7 1093 6.98 3.95
433.23 0.969 3.15 -0.157 0.147 6.04 -- -38 -0.0885 7.51 1005 84 8.3 1.17
474.38 1.01 3.13 -0.0156 0.194 0.462 -- -- -0.123 9.07 998.7 1141 6.98 3.9
434.26 0.971 3.15 -0.16 -- 6.04 -- -37.9 -0.0855 -- 1005 83 8.39 1.12
474.92 1.02 3.13 -0.00202 0.198 -- -0.283 -- -0.127 9.19 -- -- -- --
475.14 1.02 3.13 -0.0135 0.205 -- -- -- -0.128 8.57 -- -- -- --
475.36 1.02 3.13 -0.0197 -- 0.325 -- -- -0.122 -- 1006 1136 7.08 4.25
472.36 1.01 3.13 -- 0.204 0.333 -- -- -0.116 8.39 1006 1131 7.16 3.63
477.49 1.02 3.13 -0.0127 -- -- -- -- -0.126 -- -- -- -- --
475.14 1.02 3.13 -- 0.205 -- -- -- -0.127 8.57 -- -- -- --
471.56 1.01 3.08 -- -- 0.409 -- -- -0.0324 -- 1019 1549 7.23 1.63
477.5 1.02 3.13 -- -- -- -- -- -0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 433.16 atmosphere 1005 90 < th dose dependent rect. 8 1
4 433.93 atmosphere 1005 10 < th dose dependent rect. 10 1
14 438.96 atmosphere 1000 10 < th dose independent rect. 24 2
16 439.79 atmosphere 1000 90 < th dose dependent rect. 24 1
19 440.08 atmosphere 1000 90 < th dose independent rect. 24 1
40 441.88 atmosphere 1005 90 < th dose independent rect. 8 1
47 445.95 atmosphere 1005 90 < th dose dependent rect. 5 5
50 446.08 temperature 30 10 > th dose independent rect. 14 1
52 446.12 atmosphere 1005 10 < th dose independent rect. 9 1
74 447.04 wind 1 90 < th dose dependent rect. 9 1
75 447.09 wind 1 90 < th dose dependent rect. 13 1
81 447.73 humidity 80 30 > th dose independent rect. 9 2
97 449.72 wind 1 90 < th dose independent rect. 9 1
98 449.87 humidity 80 90 > th dose dependent rect. 8 2
100 450.17 temperature 30 10 > th dose independent rect. 13 6
116 450.33 temperature 20 10 > th dose dependent rect. 13 13
119 450.44 wind 1 90 < th dose independent rect. 13 1
125 450.64 wind 1 10 < th dose independent rect. 9 1
130 450.82 temperature 30 90 < th dose dependent rect. 10 19
131 450.83 humidity 80 10 > th dose dependent rect. 10 1
167 452.32 atmosphere 1000 10 < th dose independent rect. 22 5
169 452.35 atmosphere 1000 270 < th dose independent rect. 22 1
178 452.65 atmosphere 1005 90 < th dose dependent rect. 23 11
181 452.69 wind 1 10 < th dose dependent rect. 9 1
203 453.67 humidity 80 90 < th dose dependent rect. 6 1
210 454.00 temperature 25 720 > th dose dependent rect. 13 2
212 454.00 temperature 25 10 > th dose dependent rect. 13 9
216 454.04 atmosphere 1005 90 < th dose independent rect. 23 16
224 454.14 atmosphere 1005 270 < th dose independent rect. 21 17
227 454.23 atmosphere 1005 10 < th dose dependent rect. 24 11
240 454.53 wind 1 1440 < th dose dependent rect. 8 1
244 454.60 humidity 80 90 < th dose independent rect. 6 1
249 454.61 atmosphere 1005 30 < th dose dependent rect. 22 13
261 454.76 temperature 25 10 > th dose dependent rect. 13 20
265 454.81 wind 1 1440 < th dose independent rect. 8 1
272 454.89 humidity 90 270 > th dose dependent rect. 6 1
280 455.06 temperature 20 90 < th dose independent rect. 6 12
288 455.16 temperature 25 720 > th dose dependent rect. 10 6
303 455.24 atmosphere 1005 270 > th dose independent rect. 22 15
325 455.48 wind 3 1440 < th dose independent rect. 11 1
326 455.48 temperature 20 90 < th dose independent rect. 6 6
333 455.61 wind 1 1440 > th dose independent rect. 8 1
338 455.66 temperature 25 720 > th dose dependent rect. 10 9
349 455.88 wind 3 1440 > th dose independent rect. 11 1
351 455.88 temperature 20 90 < th dose dependent rect. 6 5
400 456.32 temperature 20 90 < th dose independent rect. 6 2
405 456.33 wind 3 43200 < th dose dependent rect. 18 1
413 456.38 temperature 25 720 > th dose dependent sin 22 NA
425 456.47 atmosphere 1000 10 > th dose independent rect. 11 2
428 456.48 temperature 20 10 < th dose dependent rect. 7 7
433 456.50 temperature 20 10 < th dose dependent rect. 7 5
469 456.63 atmosphere 1005 720 > th dose independent rect. 1 2
472 456.64 atmosphere 1005 270 < th dose dependent rect. 6 1
496 456.75 atmosphere 995 10 > th dose dependent rect. 10 21
504 456.79 temperature 20 90 < th dose dependent rect. 6 2
528 456.87 wind 3 1440 < th dose dependent rect. 11 1
554 456.99 temperature 30 720 > th dose independent rect. 13 2
588 457.11 humidity 80 14400 > th dose independent rect. 6 2
597 457.12 atmosphere 1000 10 < th dose dependent rect. 22 5
626 457.24 atmosphere 1005 270 < th dose independent sin 6 NA
695 457.51 atmosphere 995 4320 > th dose independent rect. 12 2
702 457.52 wind 1 43200 < th dose dependent rect. 13 6
707 457.53 temperature 25 720 > th dose dependent rect. 18 22
722 457.58 wind 5 10 > th dose independent rect. 8 1
727 457.58 wind 5 10 > th dose dependent rect. 8 1
774 457.68 temperature 25 90 < th dose independent rect. 10 19
804 457.74 temperature 10 720 > th dose dependent rect. 12 5
814 457.77 atmosphere 1005 1440 > th dose independent rect. 20 14
822 457.78 temperature 15 10 > th dose dependent rect. 13 22
831 457.81 atmosphere 1005 1440 < th dose independent rect. 8 1
840 457.85 atmosphere 1005 720 < th dose independent rect. 22 8
853 457.88 atmosphere 1005 10 < th dose dependent rect. 13 22
861 457.91 atmosphere 1005 90 > th dose independent rect. 9 22
885 457.99 atmosphere 1005 1440 < th dose independent rect. 20 14
899 458.01 temperature 25 720 > th dose dependent rect. 12 23
908 458.05 atmosphere 1005 1440 > th dose independent rect. 8 1
918 458.08 temperature 30 90 < th dose dependent rect. 14 15
932 458.12 temperature 25 720 > th dose dependent no NA NA
935 458.13 atmosphere 1005 720 < th dose independent rect. 22 11
951 458.18 wind 7 10 < th dose independent rect. 13 22
959 458.21 atmosphere 1005 720 > th dose independent rect. 24 5
962 458.22 atmosphere 1005 270 > th dose independent sin 6 NA
969 458.23 atmosphere 1005 90 < th dose independent rect. 4 11
973 458.24 wind 7 90 < th dose independent rect. 12 23