Os03g0640400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0640400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.15 | 0.352 | 11.1 | -0.552 | 0.723 | -0.385 | -0.011 | -3.52 | 0.0295 | 22.2 | 8.568 | 10683 | -- | -- |
| 67.32 | 0.385 | 10.9 | 0.133 | 0.732 | 0.153 | -0.0439 | -- | 0.202 | 22.3 | 6.499 | 18369 | -- | -- |
| 56.15 | 0.349 | 11.1 | -0.551 | 0.723 | -0.385 | -- | -3.52 | 0.0296 | 22.2 | 8.554 | 10689 | -- | -- |
| 67.33 | 0.385 | 10.9 | 0.135 | 0.733 | 0.154 | -- | -- | 0.202 | 22.3 | 6.499 | 18369 | -- | -- |
| 87.47 | 0.436 | 11 | -0.52 | -- | -0.374 | -- | -3.39 | 0.0293 | -- | 6.586 | 11606 | -- | -- |
| 67.54 | 0.385 | 10.9 | 0.163 | 0.711 | -- | -0.05 | -- | 0.224 | 22.1 | -- | -- | -- | -- |
| 67.55 | 0.385 | 10.9 | 0.165 | 0.712 | -- | -- | -- | 0.224 | 22.1 | -- | -- | -- | -- |
| 96.47 | 0.459 | 10.9 | 0.237 | -- | -0.345 | -- | -- | 0.271 | -- | 14.3 | 3732 | -- | -- |
| 67.76 | 0.385 | 10.9 | -- | 0.743 | 0.219 | -- | -- | 0.18 | 22.4 | 6.499 | 18369 | -- | -- |
| 98.19 | 0.463 | 10.9 | 0.174 | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
| 68.27 | 0.386 | 10.9 | -- | 0.712 | -- | -- | -- | 0.206 | 22.1 | -- | -- | -- | -- |
| 97.75 | 0.46 | 10.9 | -- | -- | 0.235 | -- | -- | 0.171 | -- | 11.19 | 3749 | -- | -- |
| 98.99 | 0.464 | 10.9 | -- | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.99 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 4 | 55.09 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 10 | 55.13 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 14 | 55.20 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 46 | 55.48 | temperature | 20.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 58 | 55.53 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 60 | 55.53 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 86 | 55.63 | wind | 7.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 92 | 55.65 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 118 | 55.74 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 134 | 55.78 | wind | 7.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 139 | 55.79 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 140 | 55.79 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 144 | 55.80 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 146 | 55.81 | temperature | 20.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 153 | 55.83 | wind | 7.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 160 | 55.83 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 164 | 55.84 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 14 |
| 235 | 55.93 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 283 | 55.97 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 22 |
| 298 | 55.99 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 382 | 56.06 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 384 | 56.06 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 417 | 56.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 422 | 56.10 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 423 | 56.10 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 434 | 56.10 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 442 | 56.11 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 461 | 56.12 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 8 | 13 |
| 512 | 56.16 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 515 | 56.16 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 516 | 56.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 548 | 56.18 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 564 | 56.20 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 586 | 56.21 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 5 |
| 594 | 56.22 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 681 | 56.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 696 | 56.26 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 719 | 56.27 | wind | 7.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 736 | 56.28 | wind | 7.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 740 | 56.28 | wind | 5.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 751 | 56.28 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 756 | 56.28 | wind | 5.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 783 | 56.30 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 797 | 56.30 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 809 | 56.31 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 840 | 56.32 | wind | 5.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 854 | 56.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 866 | 56.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 878 | 56.34 | temperature | 20.0 | 14400 | > th | dose independent | no | NA | NA |
| 879 | 56.34 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 914 | 56.35 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 954 | 56.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 977 | 56.38 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 23 |