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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0638000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Centromere protein-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0558) R2 : 0.204
β1 : -0.958 (0.207) R2dD : 0.0406 R2D : 0.000998
β2 : 0.578 (0.142) R2dC : 0.0291 R2C : 0.0177
β3 : -1.36 (0.144) R2dE : 0.175 R2E : 0.0782
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.483 (0.122) R2dN8 : 0.0393 R2N8 : 0.00363
σ : 1.03
deviance : 493
__
_____
C
peak time of C : 7.52
E
wheather : temperature
threshold : 30.57
memory length : 1231
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
492.41 1.04 3.85 -1.55 0.589 -1.71 0.141 3.14 0.469 7.54 30.36 1232 -- --
492.95 1.03 3.78 -0.964 0.575 -1.37 0.133 -- 0.489 7.62 30.53 1224 -- --
492.39 1.03 3.84 -1.51 0.586 -1.7 -- 3.07 0.484 7.52 30.56 1231 -- --
493 1.03 3.78 -0.958 0.578 -1.36 -- -- 0.483 7.52 30.57 1231 -- --
510.54 1.05 3.86 -1.5 -- -1.69 -- 3.08 0.491 -- 30.65 1258 -- --
585.44 1.13 3.84 -0.58 0.606 -- 0.323 -- 0.197 6.08 -- -- -- --
585.69 1.13 3.84 -0.576 0.608 -- -- -- 0.196 6.14 -- -- -- --
510.61 1.05 3.79 -0.941 -- -1.34 -- -- 0.491 -- 30.64 1258 -- --
515.86 1.06 3.77 -- 0.563 -1.22 -- -- 0.552 7.51 30.6 1224 -- --
604.87 1.15 3.85 -0.559 -- -- -- -- 0.21 -- -- -- -- --
594.45 1.14 3.83 -- 0.6 -- -- -- 0.261 6.19 -- -- -- --
533.03 1.08 3.78 -- -- -1.22 -- -- 0.563 -- 30.7 1242 -- --
613.12 1.16 3.84 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 483.74 temperature 30 720 < th dose independent rect. 17 10
2 484.73 radiation 40 1440 < th dose dependent rect. 16 12
3 484.75 radiation 30 1440 < th dose dependent rect. 16 2
5 484.84 radiation 1 1440 > th dose dependent rect. 16 2
8 484.90 humidity 70 720 > th dose independent rect. 17 11
10 485.07 radiation 30 1440 < th dose dependent rect. 16 6
14 485.26 radiation 30 1440 < th dose dependent rect. 16 8
33 485.66 radiation 10 1440 > th dose independent rect. 16 14
52 485.90 radiation 10 1440 > th dose independent rect. 16 2
67 486.97 temperature 30 720 < th dose independent rect. 17 2
123 489.62 humidity 70 720 > th dose independent rect. 17 3
198 492.36 temperature 30 1440 > th dose independent rect. 16 3
227 492.75 temperature 30 1440 < th dose independent rect. 16 15
230 492.94 temperature 30 1440 < th dose independent rect. 16 6
231 492.94 temperature 30 1440 < th dose independent rect. 16 8
233 492.96 humidity 70 720 > th dose independent rect. 18 1
272 494.13 radiation 10 1440 < th dose independent rect. 16 2
276 494.48 temperature 30 1440 > th dose independent sin 12 NA
277 494.61 temperature 30 1440 < th dose independent sin 12 NA
300 495.18 radiation 30 1440 > th dose independent rect. 15 17
306 495.27 humidity 50 4320 > th dose independent rect. 13 4
308 495.29 radiation 10 1440 < th dose independent rect. 16 12
314 495.37 radiation 10 1440 < th dose independent rect. 16 6
317 495.47 radiation 10 1440 < th dose independent rect. 16 8
326 495.60 humidity 80 1440 < th dose dependent rect. 18 1
361 495.80 temperature 30 14400 > th dose dependent rect. 17 2
378 496.03 radiation 30 1440 < th dose independent rect. 15 17
379 496.12 radiation 10 1440 > th dose independent sin 14 NA
389 496.43 humidity 60 720 > th dose dependent rect. 18 1
418 496.70 temperature 30 14400 < th dose independent rect. 18 13
419 496.72 temperature 30 14400 < th dose independent rect. 18 11
432 497.12 temperature 30 14400 < th dose independent rect. 18 6
435 497.15 temperature 30 14400 < th dose independent rect. 18 4
436 497.23 temperature 25 1440 > th dose dependent rect. 16 8
446 497.37 temperature 30 14400 < th dose independent rect. 18 2
448 497.40 temperature 25 720 > th dose dependent rect. 18 14
458 497.51 humidity 80 1440 < th dose dependent rect. 17 3
461 497.58 radiation 30 1440 > th dose independent rect. 15 2
478 497.59 temperature 25 1440 > th dose dependent rect. 15 16
480 497.66 radiation 30 1440 < th dose independent rect. 15 14
494 497.78 temperature 25 1440 > th dose dependent sin 15 NA
507 497.93 temperature 25 1440 > th dose dependent rect. 12 12
511 497.95 temperature 25 1440 > th dose dependent rect. 12 19
534 498.05 radiation 30 1440 < th dose independent rect. 15 7
535 498.05 temperature 25 1440 > th dose dependent rect. 18 1
542 498.08 radiation 30 1440 < th dose independent rect. 15 2
562 498.28 radiation 30 1440 < th dose independent rect. 15 9
576 498.40 temperature 30 1440 > th dose dependent rect. 12 7
713 498.79 temperature 30 1440 > th dose dependent rect. 16 23
737 498.91 temperature 30 1440 < th dose independent rect. 11 20
738 498.91 temperature 30 1440 > th dose dependent no NA NA
739 498.91 temperature 30 1440 > th dose dependent rect. 8 11
830 498.92 temperature 30 1440 < th dose independent rect. 11 18
861 498.98 temperature 30 1440 < th dose independent rect. 11 11
862 498.98 temperature 30 1440 < th dose independent rect. 11 13
870 498.99 temperature 30 1440 > th dose dependent rect. 14 23
873 499.00 temperature 30 1440 < th dose independent rect. 12 22
875 499.01 temperature 30 1440 < th dose independent rect. 11 9
877 499.01 temperature 30 1440 > th dose dependent rect. 18 23
890 499.04 temperature 30 14400 > th dose independent rect. 17 2
985 499.20 temperature 30 1440 < th dose independent rect. 2 22
989 499.21 temperature 30 1440 < th dose independent rect. 2 20