Os03g0637600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os03g0637600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 735.31 | 1.27 | 5.09 | -3.78 | 1.11 | -1.96 | 0.241 | 5.27 | -0.97 | 6.66 | 2.678 | 1213 | -- | -- |
| 765.17 | 1.29 | 5.19 | -3.86 | 1.04 | -1.59 | 0.542 | -- | -0.899 | 6.45 | 3.199 | 1338 | -- | -- |
| 735.43 | 1.26 | 5.09 | -3.77 | 1.11 | -1.96 | -- | 5.31 | -0.972 | 6.6 | 2.648 | 1213 | -- | -- |
| 765.32 | 1.29 | 5.18 | -3.85 | 1.07 | -1.58 | -- | -- | -0.901 | 6.08 | 3.12 | 1341 | -- | -- |
| 799.27 | 1.32 | 5.12 | -3.77 | -- | -1.94 | -- | 4.92 | -0.938 | -- | 2.771 | 1260 | -- | -- |
| 792.44 | 1.32 | 5.13 | -4.25 | 1.07 | -- | 0.263 | -- | -0.668 | 5.9 | -- | -- | -- | -- |
| 792.54 | 1.32 | 5.13 | -4.25 | 1.07 | -- | -- | -- | -0.67 | 5.79 | -- | -- | -- | -- |
| 823.79 | 1.34 | 5.2 | -3.81 | -- | -1.59 | -- | -- | -0.853 | -- | 3.5 | 1304 | -- | -- |
| 1102.55 | 1.55 | 5.17 | -- | 1.04 | -3.68 | -- | -- | -0.809 | 6.74 | 3.361 | 1344 | -- | -- |
| 852.2 | 1.36 | 5.15 | -4.21 | -- | -- | -- | -- | -0.644 | -- | -- | -- | -- | -- |
| 1267.86 | 1.67 | 5.03 | -- | 1.01 | -- | -- | -- | -0.197 | 5.98 | -- | -- | -- | -- |
| 1157.16 | 1.58 | 5.17 | -- | -- | -3.66 | -- | -- | -0.741 | -- | 3.597 | 1339 | -- | -- |
| 1320.51 | 1.7 | 5.05 | -- | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 716.99 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 2 | 718.98 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 3 | 724.39 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 5 | 725.59 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 6 | 725.78 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 9 | 726.99 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 12 | 727.80 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 35 | 729.86 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 42 | 730.36 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 22 |
| 48 | 730.74 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 50 | 730.89 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 12 |
| 54 | 730.94 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 13 |
| 61 | 731.42 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 9 |
| 63 | 731.51 | wind | 3 | 14400 | < th | dose independent | sin | 6 | NA |
| 71 | 731.62 | wind | 3 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 84 | 731.93 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 89 | 731.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 98 | 732.16 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 13 |
| 106 | 732.26 | humidity | 90 | 720 | > th | dose independent | rect. | 5 | 1 |
| 120 | 732.43 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 122 | 732.44 | wind | 3 | 14400 | > th | dose independent | sin | 6 | NA |
| 141 | 732.70 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 19 |
| 165 | 732.90 | wind | 3 | 14400 | < th | dose dependent | sin | 5 | NA |
| 174 | 732.97 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 15 |
| 213 | 733.34 | wind | 1 | 14400 | < th | dose independent | rect. | 13 | 15 |
| 227 | 733.46 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 261 | 733.76 | wind | 3 | 14400 | < th | dose dependent | rect. | 15 | 19 |
| 326 | 734.35 | wind | 3 | 1440 | < th | dose dependent | rect. | 6 | 19 |
| 363 | 734.62 | wind | 1 | 14400 | > th | dose independent | rect. | 13 | 15 |
| 370 | 734.67 | wind | 5 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 409 | 734.95 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 22 |
| 417 | 735.06 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 16 |
| 455 | 735.31 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 495 | 735.53 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 519 | 735.73 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 535 | 735.82 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 22 |
| 537 | 735.83 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 571 | 736.02 | humidity | 70 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 573 | 736.03 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 610 | 736.24 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 668 | 736.53 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 686 | 736.62 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 695 | 736.66 | wind | 1 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 701 | 736.70 | wind | 3 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 733 | 736.84 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 12 |
| 743 | 736.89 | wind | 1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 825 | 737.35 | wind | 3 | 14400 | < th | dose independent | no | NA | NA |
| 834 | 737.38 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 841 | 737.42 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 908 | 737.80 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 23 |